ELAVL3 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000006653 T39095_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.887
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.887
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.887
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.877
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.877
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.877
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.739
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.739
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.739
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.739
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.739
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000001569 RRM 33 103
ENSMODP00000001569 RRM 120 188
ENSMODP00000001569 RRM 266 336
ENSMODP00000001576 RRM 40 110
ENSMODP00000001576 RRM 127 195
ENSMODP00000001576 RRM 293 363
ENSMODP00000008249 RRM 49 119
ENSMODP00000008249 RRM 136 204
ENSMODP00000008249 RRM 288 358

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

168 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.722
AAA96943 Xenopus laevis AAA96943 I 0.873
AAA96944 Xenopus laevis AAA96944 I 0.939
AAA96945 Xenopus laevis AAA96945 I 0.878
AAH86269 Xenopus laevis AAH86269 I 0.717
AAH94189 Xenopus laevis AAH94189 I 0.873
AAH99348 Xenopus laevis AAH99348 I 0.878
AAI69769 Xenopus laevis AAI69769 I 0.939
AAI70539 Xenopus laevis AAI70539 I 0.873
AGAP000965 Anopheles gambiae AGAP000965 I 0.708
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.726
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.869
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.934
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.878
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.736
CAA59430 Xenopus laevis CAA59430 I 0.869
CBF67567 Xenopus laevis CBF67567 I 0.878
CBU92440 Xenopus laevis CBU92440 I 0.878
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.708
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.708
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.878
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.948
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.873
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.731
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.934
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.878
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.869
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.878
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.934
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.736
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.736
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.878
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.869
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.878
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.878
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.869
elavl3 Danio rerio ENSDARG00000014420 I 0.938
hug Danio rerio ENSDARG00000016405 I 0.754
elavl1 Danio rerio ENSDARG00000038695 I 0.739
elavl2 Danio rerio ENSDARG00000040732 I 0.850
elavl4 Danio rerio ENSDARG00000045639 I 0.870
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.878
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.726
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.712
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.915
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.736
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.869
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.878
LOC100060819 Equus caballus ENSECAG00000019459 I 0.736
ELAVL2 Equus caballus ENSECAG00000020142 I 0.869
LOC100056901 Equus caballus ENSECAG00000020594 I 0.858
LOC100051268 Equus caballus ENSECAG00000022284 I 0.878
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.712
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.878
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.869
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.741
ELAVL1 Felis catus ENSFCAG00000014947 I 0.736
ELAVL1 Homo sapiens ENSG00000066044 D 0.736
ELAVL2 Homo sapiens ENSG00000107105 D 0.869
ELAVL4 Homo sapiens ENSG00000162374 D 0.878
ELAVL3 Homo sapiens ENSG00000196361 I 0.934
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.729
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.873
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.938
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.859
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.731
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.878
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.859
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.878
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.869
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.736
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.934
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.878
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.736
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.934
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.869
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.777
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.878
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.953
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.731
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.878
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.878
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.736
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.878
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.741
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.864
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.736
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.869
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.878
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.878
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.710
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.873
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.736
Elavl3 Mus musculus ENSMUSG00000003410 I 0.924
Elavl2 Mus musculus ENSMUSG00000008489 I 0.869
Elavl4 Mus musculus ENSMUSG00000028546 I 0.878
Elavl1 Mus musculus ENSMUSG00000040028 I 0.736
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.820
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.869
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.745
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.878
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.934
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.736
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.731
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.878
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.745
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.869
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.878
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.868
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.930
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.731
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.873
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.878
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.825
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.878
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.736
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.869
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.878
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.736
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.905
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.869
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.869
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.820
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.934
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.736
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.869
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.924
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.878
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.869
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.806
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.878
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.869
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.741
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.934
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.782
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.722
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.801
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.741
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.725
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.731
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.864
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.878
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.859
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.869
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.925
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.736
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.869
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.739
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.706
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.863
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.938
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.878
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.736
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.858
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.934
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.864
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.869
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.878
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.878
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.722
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.717
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.934
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.732
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.722
Q5U259 Xenopus laevis Q5U259 I 0.717
Q91584 Xenopus laevis Q91584 I 0.939
Q91903 Xenopus laevis Q91903 I 0.873