Spx (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0015818 T43015_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.854
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.839
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.797
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.748
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0070859 RRM 15 85
FBpp0070859 RRM 102 173

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001303 Ricinus communis 30183.m001303 I 0.776
99199 Helobdella robusta 99199 I 0.811
AAEL013795 Aedes aegypti AAEL013795 I 0.951
AAH45264 Xenopus laevis AAH45264 I 0.860
AAH77458 Xenopus laevis AAH77458 I 0.860
AGAP001538 Anopheles gambiae AGAP001538 I 0.944
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.720
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.720
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.895
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.867
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.783
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.783
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.727
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.762
Bm1_43460 Brugia malayi Bm1_43460 I 0.783
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.762
sap-49 Caenorhabditis elegans C08B11.5 D 0.797
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.713
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.762
CBG13349 Caenorhabditis briggsae CBG13349 I 0.783
CBN06124 Caenorhabditis brenneri CBN06124 I 0.797
CJA19238 Caenorhabditis japonica CJA19238 I 0.783
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.951
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.951
CRE01639 Caenorhabditis remanei CRE01639 I 0.797
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.769
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.867
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.867
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.867
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.853
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.804
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.867
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.867
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.867
sf3b4 Danio rerio ENSDARG00000018574 D 0.867
LOC100054350 Equus caballus ENSECAG00000024737 I 0.867
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.867
SF3B4 Homo sapiens ENSG00000143368 I 0.867
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.867
SF3B4 Gallus gallus ENSGALG00000013352 I 0.867
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.867
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.867
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.811
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.867
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.867
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.867
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.867
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.867
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.867
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.867
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.867
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.867
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.867
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.860
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.867
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.867
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.867
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.867
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.834
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.867
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.867
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.867
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.867
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.867
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.867
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.867
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.713
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.748
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.874
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.748
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.860
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.748
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.888
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.720
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.706
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.846
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.748
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.860
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.706
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.860
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.986
GF20385 Drosophila ananassae FBgn0097392 I 0.993
GG19577 Drosophila erecta FBgn0111779 I 0.993
GH17589 Drosophila grimshawi FBgn0125059 I 0.986
GI16317 Drosophila mojavensis FBgn0139065 I 0.986
GL21313 Drosophila persimilis FBgn0158906 I 0.986
GM12470 Drosophila sechellia FBgn0167407 I 1.000
GJ15655 Drosophila virilis FBgn0202845 I 0.986
GK19717 Drosophila willistoni FBgn0221715 I 0.979
GE16738 Drosophila yakuba FBgn0234234 I 0.993
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.720
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.720
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.874
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.762
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.762
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.755
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.762
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.755
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.713
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.727
ISCW010601 Ixodes scapularis ISCW010601 I 0.881
LOAG_01189 Loa loa LOAG_01189 I 0.783
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.762
MDP0000131129 Malus x domestica MDP0000131129 I 0.769
MDP0000320945 Malus x domestica MDP0000320945 I 0.769
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.762
Minc01580 Meloidogyne incognita Minc01580 I 0.769
Minc02568 Meloidogyne incognita Minc02568 I 0.769
Minc12926 Meloidogyne incognita Minc12926 I 0.769
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.909
PHUM263440 Pediculus humanus PHUM263440 I 0.874
PK08238.1 Cannabis sativa PK08238.1 I 0.776
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.776
ppa007508m Prunus persica ppa007508m I 0.783
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.783
SB01G020190 Sorghum bicolor Sb01g020190 I 0.762
Smp_067420 Schistosoma mansoni Smp_067420 D 0.839
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.811
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.741
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.783
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.818
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.846
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.818