Cucsa.311530 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.311530 T49629_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.311530.1 RRM 19 87

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29983.m003293 Ricinus communis 29983.m003293 I 0.000
30076.m004440 Ricinus communis 30076.m004440 I 0.754
30170.m013735 Ricinus communis 30170.m013735 I 0.000
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.000
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.739
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.000
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.000
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.000
BRADI2G61350 Brachypodium distachyon BRADI2G61350 N 0.000
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.725
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.739
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.000
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.000
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.000
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.783
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.000
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.812
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.000
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.725
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.000
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.000
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.754
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.000
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.754
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.754
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.768
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.000
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.000
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.768
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.000
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.000
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.000
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.725
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.000
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.754
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.000
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.000
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.000
MDP0000181802 Malus x domestica MDP0000181802 N 0.000
MDP0000271231 Malus x domestica MDP0000271231 N 0.000
MDP0000488395 Malus x domestica MDP0000488395 I 0.739
MDP0000548950 Malus x domestica MDP0000548950 I 0.739
MDP0000744398 Malus x domestica MDP0000744398 I 0.739
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.783
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.000
mgf002440m Mimulus guttatus mgf002440m N 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.826
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.000
PK14266.1 Cannabis sativa PK14266.1 I 0.739
PK21213.1 Cannabis sativa PK21213.1 I 0.812
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.783
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.739
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.783
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.754
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.000
ppa009564m Prunus persica ppa009564m I 0.000
ppa009716m Prunus persica ppa009716m I 0.768
ppa016222m Prunus persica ppa016222m I 0.725
SB03G041530 Sorghum bicolor Sb03g041530 I 0.000
SB03G046430 Sorghum bicolor Sb03g046430 N 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.000