Cucsa.311530 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.311530 T49629_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.311530.1 RRM 19 87

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK15672.1 Cannabis sativa PK15672.1 I 0.928
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.913
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.870
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.870
ppa018926m Prunus persica ppa018926m I 0.870
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.870
ppa019392m Prunus persica ppa019392m I 0.870
MDP0000134468 Malus x domestica MDP0000134468 I 0.870
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.855
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.855
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.855
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.855
29908.m006046 Ricinus communis 29908.m006046 I 0.841
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.841
MDP0000233609 Malus x domestica MDP0000233609 I 0.841
mgf017214m Mimulus guttatus mgf017214m I 0.826
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.812
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.812
PK21213.1 Cannabis sativa PK21213.1 I 0.812
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.797
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.797
ppa009964m Prunus persica ppa009964m I 0.797
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.797
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.783
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.783
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.783
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.783
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.783
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.783
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.783
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.783
MDP0000138486 Malus x domestica MDP0000138486 I 0.783
ppa018603m Prunus persica ppa018603m I 0.768
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.768
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.768
CU179634_3 Medicago truncatula CU179634_3 I 0.768
MDP0000857317 Malus x domestica MDP0000857317 I 0.768
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.768
MDP0000118777 Malus x domestica MDP0000118777 I 0.768
ppa009716m Prunus persica ppa009716m I 0.768
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.754
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.754
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.754
30076.m004440 Ricinus communis 30076.m004440 I 0.754
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.754
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.754
MDP0000284454 Malus x domestica MDP0000284454 I 0.754
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.754
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.754
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.754
MDP0000548950 Malus x domestica MDP0000548950 I 0.739
PK14266.1 Cannabis sativa PK14266.1 I 0.739
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.739
MDP0000744398 Malus x domestica MDP0000744398 I 0.739
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.739
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.739
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.739
MDP0000488395 Malus x domestica MDP0000488395 I 0.739
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.739
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.725
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.725
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.725
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.725
MDP0000184420 Malus x domestica MDP0000184420 I 0.725
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.725
ppa016222m Prunus persica ppa016222m I 0.725
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710