estExt_gwp_gw1.C_700168 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_gwp_gw1.C_700168 T51619_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6		 Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.769
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.764
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.748
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M205_0.6 RRM 27 97
M205_0.6 RRM 114 185

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_700168 RRM 27 97
estExt_gwp_gw1.C_700168 RRM 114 185

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001303 Ricinus communis 30183.m001303 I 0.916
59062 Aureococcus anophagefferens 59062 I 0.713
99199 Helobdella robusta 99199 I 0.755
AAEL013795 Aedes aegypti AAEL013795 I 0.769
AAH45264 Xenopus laevis AAH45264 I 0.783
AAH77458 Xenopus laevis AAH77458 I 0.783
AGAP001538 Anopheles gambiae AGAP001538 I 0.755
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.762
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.755
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.776
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.727
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.727
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.874
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.909
Bm1_43460 Brugia malayi Bm1_43460 I 0.748
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.895
sap-49 Caenorhabditis elegans C08B11.5 D 0.769
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.713
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.930
CBG13349 Caenorhabditis briggsae CBG13349 I 0.755
CBN06124 Caenorhabditis brenneri CBN06124 I 0.769
CJA19238 Caenorhabditis japonica CJA19238 I 0.769
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.769
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.769
CRE01639 Caenorhabditis remanei CRE01639 I 0.769
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.951
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.783
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.776
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.776
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.762
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.727
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.776
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.776
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.776
sf3b4 Danio rerio ENSDARG00000018574 D 0.776
LOC100054350 Equus caballus ENSECAG00000024737 I 0.776
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.776
SF3B4 Homo sapiens ENSG00000143368 I 0.776
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.776
SF3B4 Gallus gallus ENSGALG00000013352 I 0.776
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.776
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.776
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.720
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.776
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.776
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.776
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.776
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.776
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.776
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.776
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.776
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.776
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.776
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.769
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.776
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.776
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.776
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.776
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.752
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.776
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.776
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.776
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.776
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.776
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.776
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.776
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.741
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.769
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.818
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.769
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.818
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.783
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.755
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.790
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.804
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.762
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.776
Spx Drosophila melanogaster FBgn0015818 I 0.748
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.755
GF20385 Drosophila ananassae FBgn0097392 I 0.755
GG19577 Drosophila erecta FBgn0111779 I 0.755
GH17589 Drosophila grimshawi FBgn0125059 I 0.762
GI16317 Drosophila mojavensis FBgn0139065 I 0.762
GL21313 Drosophila persimilis FBgn0158906 I 0.755
GM12470 Drosophila sechellia FBgn0167407 I 0.748
GJ15655 Drosophila virilis FBgn0202845 I 0.762
GK19717 Drosophila willistoni FBgn0221715 I 0.755
GE16738 Drosophila yakuba FBgn0234234 I 0.755
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.839
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.881
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.769
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.937
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.923
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.895
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.902
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.937
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.769
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.790
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.769
ISCW010601 Ixodes scapularis ISCW010601 I 0.790
LOAG_01189 Loa loa LOAG_01189 I 0.755
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.909
MDP0000131129 Malus x domestica MDP0000131129 I 0.951
MDP0000320945 Malus x domestica MDP0000320945 I 0.951
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.937
Minc01580 Meloidogyne incognita Minc01580 I 0.713
Minc02568 Meloidogyne incognita Minc02568 I 0.713
Minc12926 Meloidogyne incognita Minc12926 I 0.713
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.769
PHUM263440 Pediculus humanus PHUM263440 I 0.762
PK08238.1 Cannabis sativa PK08238.1 I 0.944
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.930
ppa007508m Prunus persica ppa007508m I 0.937
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.727
SB01G020190 Sorghum bicolor Sb01g020190 I 0.909
Smp_067420 Schistosoma mansoni Smp_067420 D 0.748
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.769
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.762
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.755
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.755
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.769
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.755