MDP0000851531 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000851531 T57730_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000851531 RRM 119 189
MDP0000851531 RRM 199 269
MDP0000851531 RRM 293 363

Links

Other RRM family RBPs
Other Malus x domestica RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28629.m000549 Ricinus communis 28629.m000549 N 0.817
30055.m001569 Ricinus communis 30055.m001569 N 0.756
AT3G52660 Arabidopsis thaliana AT3G52660-TAIR-G N 0.721
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.878
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.864
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.878
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.878
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.864
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.779
Cucsa.185730 Cucumis sativus Cucsa.185730 N 0.793
XM_002876116.1 Arabidopsis lyrata fgenesh2_kg.5__1629__AT3G52660.1 N 0.726
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.831
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.751
Glyma12g09530.1 Glycine max Glyma12g09530.1 N 0.751
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.804
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.841
MDP0000131956 Malus x domestica MDP0000131956 N 0.789
MDP0000181657 Malus x domestica MDP0000181657 N 0.991
MDP0000250854 Malus x domestica MDP0000250854 N 0.742
Medtr7g009690 Medicago truncatula Medtr7g009690 N 0.714
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.779
mgf001576m Mimulus guttatus mgf001576m N 0.836
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.789
PK04414.1 Cannabis sativa PK04414.1 N 0.883
PK05405.1 Cannabis sativa PK05405.1 N 0.793
B9MYW2_POPTR Populus trichocarpa POPTR_0004s21210 N 0.709
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.836
B9HQ12_POPTR Populus trichocarpa POPTR_0009s16490 N 0.718
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.845
ppa004677m Prunus persica ppa004677m N 0.775
ppa004785m Prunus persica ppa004785m N 0.962