AAH44085 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH44085 T59457_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.705
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH44085 RRM 6 68
AAH44085 RRM 117 182

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH71160 Xenopus laevis AAH71160 I 0.977
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.783
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.721
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.783
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.884
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.721
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.783
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.783
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.736
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.736
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.783
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.713
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.783
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.729
srsf5b Danio rerio ENSDARG00000027734 I 0.775
srsf5a Danio rerio ENSDARG00000029818 I 0.853
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.713
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.713
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
LOC100053264 Equus caballus ENSECAG00000026873 I 0.783
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.775
SRSF5 Felis catus ENSFCAG00000008848 I 0.783
SRSF5 Homo sapiens ENSG00000100650 D 0.783
SRSF4 Homo sapiens ENSG00000116350 I 0.752
SRSF6 Homo sapiens ENSG00000124193 I 0.713
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.729
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.868
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.767
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.845
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.713
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.783
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.775
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.721
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.845
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.705
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.713
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.783
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.705
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.783
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.721
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.783
Srsf6 Mus musculus ENSMUSG00000016921 I 0.713
Srsf5 Mus musculus ENSMUSG00000021134 I 0.783
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.744
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.783
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.783
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.783
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.845
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.729
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.713
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.783
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.713
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.783
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.729
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.783
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.713
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.783
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.752
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.729
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.783
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.860
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.721
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.713
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.721
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.783
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.705
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.868
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.721
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.783
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.783
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.783
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.783
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.783
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.705
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.977
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.752
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.783
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.729
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.767
B52 Drosophila melanogaster FBgn0004587 D 0.705
GF17608 Drosophila ananassae FBgn0094626 I 0.705
GK13948 Drosophila willistoni FBgn0215954 I 0.705
ISCW010321 Ixodes scapularis ISCW010321 I 0.736
ISCW010322 Ixodes scapularis ISCW010322 I 0.705
ISCW014220 Ixodes scapularis ISCW014220 I 0.705
PHUM290500 Pediculus humanus PHUM290500 I 0.713
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.744
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.744