CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH44085
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH44085
T59457_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.705
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.705
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH44085
RRM
6
68
VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKVLCSERVT
AAH44085
RRM
117
182
IIVENLSSRVSWQDLKGFMRKAGEVTYVDAHRSNRNEGVVEFASYTDMKSALDKLDGVELSGRKIK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
108 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB02963.1
Alternaria brassicicola
AB02963.1
N
0.000
ACLA_036560
Aspergillus clavatus
CADACLAG00003885
N
0.000
AFLA_086540
Aspergillus flavus
CADAFLAG00001433
N
0.000
AFUA_3G08580
Aspergillus fumigatus
CADAFUAG00005852
N
0.000
ANIA_02989
Aspergillus nidulans
CADANIAG00010091
N
0.000
AO090005001419
Aspergillus oryzae
CADAORAG00003299
N
0.000
NFIA_068550
Neosartorya fischeri
CADNFIAG00006348
N
0.000
CIMG_07653
Coccidioides immitis
CIMG_07653
N
0.000
CPSG_09452
Coccidioides posadasii
CPSG_09452
N
0.000
estExt_fgenesh1_kg.C_chr_50164
Mycosphaerella graminicola
estExt_fgenesh1_kg.C_chr_50164
N
0.000
estExt_fgenesh5_pg.C_40456
Trichoderma reesei
estExt_fgenesh5_pg.C_40456
N
0.000
estExt_Genewise1Plus.C_12858
Trichoderma atroviride
estExt_Genewise1Plus.C_12858
N
0.000
estExt_Genewise1Plus.C_31070
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_31070
N
0.000
estExt_Genewise1Plus.C_70764
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_70764
N
0.000
FGSG_00442
Fusarium graminearum
FGSG_00442
N
0.000
FOXG_00610
Fusarium oxysporum
FOXG_00610
N
0.000
FVEG_00902
Fusarium verticillioides
FVEG_00902
N
0.000
genemark.1698_g
Thielavia terrestris
genemark.1698_g
N
0.000
GLRG_03991
Colletotrichum graminicola
GLRG_03991
N
0.000
gw1.9.437.1
Trichoderma virens
gw1.9.437.1
N
0.000
MCYG_06115
Microsporum canis
MCYG_06115
N
0.000
MGYG_01973
Microsporum gypseum
MGYG_01973
N
0.000
NCU02736
Neurospora crassa
NCU02736
N
0.000
Pa_1_13615
Podospora anserina
Pa_1_13615
N
0.000
Pc06g01290
Penicillium chrysogenum
Pc06g01290
N
0.000
PTRG_07976
Pyrenophora tritici repentis
PTRG_07976
N
0.000
SNOG_04431
Stagonospora nodorum
SNOG_04431
N
0.000
SS1G_02886
Sclerotinia sclerotiorum
SS1G_02886
N
0.000
TERG_04706
Trichophyton rubrum
TERG_04706
N
0.000
TESG_06069
Trichophyton tonsurans
TESG_06069
N
0.000
VDAG_03252
Verticillium dahliae
VDAG_03252
N
0.000