AAH44085 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH44085 T59457_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.705
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH44085 RRM 6 68
AAH44085 RRM 117 182

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB02963.1 Alternaria brassicicola AB02963.1 N 0.000
ACLA_036560 Aspergillus clavatus CADACLAG00003885 N 0.000
AFLA_086540 Aspergillus flavus CADAFLAG00001433 N 0.000
AFUA_3G08580 Aspergillus fumigatus CADAFUAG00005852 N 0.000
ANIA_02989 Aspergillus nidulans CADANIAG00010091 N 0.000
AO090005001419 Aspergillus oryzae CADAORAG00003299 N 0.000
NFIA_068550 Neosartorya fischeri CADNFIAG00006348 N 0.000
CIMG_07653 Coccidioides immitis CIMG_07653 N 0.000
CPSG_09452 Coccidioides posadasii CPSG_09452 N 0.000
estExt_fgenesh1_kg.C_chr_50164 Mycosphaerella graminicola estExt_fgenesh1_kg.C_chr_50164 N 0.000
estExt_fgenesh5_pg.C_40456 Trichoderma reesei estExt_fgenesh5_pg.C_40456 N 0.000
estExt_Genewise1Plus.C_12858 Trichoderma atroviride estExt_Genewise1Plus.C_12858 N 0.000
estExt_Genewise1Plus.C_31070 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_31070 N 0.000
estExt_Genewise1Plus.C_70764 Mycosphaerella fijiensis estExt_Genewise1Plus.C_70764 N 0.000
FGSG_00442 Fusarium graminearum FGSG_00442 N 0.000
FOXG_00610 Fusarium oxysporum FOXG_00610 N 0.000
FVEG_00902 Fusarium verticillioides FVEG_00902 N 0.000
genemark.1698_g Thielavia terrestris genemark.1698_g N 0.000
GLRG_03991 Colletotrichum graminicola GLRG_03991 N 0.000
gw1.9.437.1 Trichoderma virens gw1.9.437.1 N 0.000
MCYG_06115 Microsporum canis MCYG_06115 N 0.000
MGYG_01973 Microsporum gypseum MGYG_01973 N 0.000
NCU02736 Neurospora crassa NCU02736 N 0.000
Pa_1_13615 Podospora anserina Pa_1_13615 N 0.000
Pc06g01290 Penicillium chrysogenum Pc06g01290 N 0.000
PTRG_07976 Pyrenophora tritici repentis PTRG_07976 N 0.000
SNOG_04431 Stagonospora nodorum SNOG_04431 N 0.000
SS1G_02886 Sclerotinia sclerotiorum SS1G_02886 N 0.000
TERG_04706 Trichophyton rubrum TERG_04706 N 0.000
TESG_06069 Trichophyton tonsurans TESG_06069 N 0.000
VDAG_03252 Verticillium dahliae VDAG_03252 N 0.000