CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_002156465.1
(
Hydra magnipapillata
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
XP_002156465.1
T61721_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.895
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002156465.1
S1
13
87
PEIDDVVMVNVRSIADMGAYVHLLEYKNIEGMILLSELSRRRIRSINKLIRVGRNECVVVIRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Hydra magnipapillata
RBPs
263 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG11249
Caenorhabditis briggsae
CBG11249
N
0.000
CBG20851
Caenorhabditis briggsae
CBG20851
N
0.000
CBG23753
Caenorhabditis briggsae
CBG23753
N
0.000
CBN23640
Caenorhabditis brenneri
CBN23640
N
0.000
CBN24850
Caenorhabditis brenneri
CBN24850
N
0.000
CJA09680
Caenorhabditis japonica
CJA09680
N
0.000
CJA11631
Caenorhabditis japonica
CJA11631
N
0.000
CRE05531
Caenorhabditis remanei
CRE05531
N
0.000
CRE26079
Caenorhabditis remanei
CRE26079
N
0.000
ccch-2
Caenorhabditis elegans
F38C2.5
N
0.000
pos-1
Caenorhabditis elegans
F52E1.1
N
0.000
mex-1
Caenorhabditis elegans
W03C9.7
N
0.000
dct-13
Caenorhabditis elegans
Y116A8C.17
N
0.000
Y116A8C.19
Caenorhabditis elegans
Y116A8C.19
N
0.000
Y116A8C.20
Caenorhabditis elegans
Y116A8C.20
N
0.000
ccch-5
Caenorhabditis elegans
Y57G11C.25
N
0.000