CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.28.197.1
(
Nectria haematococca
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
gw1.28.197.1
T05531_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.28.197.1
CCCH ZF
37
61
SHVPCKFFRQGACQAGNACPFSHDL
gw1.28.197.1
CCCH ZF
66
89
ENVCKYFAKGNCKFGPKCANIHVL
Links
Other
CCCH ZF
family RBPs
Other
Nectria haematococca
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NAB3
Saccharomyces cerevisiae
YPL190C
N
0.000
21543_Multiple
Saccharomyces mikatae
21543_Multiple
N
0.000
22141_YPL190C
Saccharomyces paradoxus
22141_YPL190C
N
0.000
24695_YPL190C
Saccharomyces bayanus
24695_YPL190C
N
0.000
KLLA0E19229g
Kluyveromyces lactis
KLLA0E19229g
N
0.000
ZYRO0G08360g
Zygosaccharomyces rouxii
ZYRO0G08360g
N
0.000