LOC_Os11g40730 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os11g40730 T12449_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g40730.1 CCHC ZF 641 658

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.000
ppa026384m Prunus persica ppa026384m I 0.000
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.000
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.000
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.000
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.000
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.000
mgf016660m Mimulus guttatus mgf016660m I 0.000
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.000
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.000
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.000
MDP0000125082 Malus x domestica MDP0000125082 I 0.000
MDP0000138486 Malus x domestica MDP0000138486 I 0.000
MDP0000184420 Malus x domestica MDP0000184420 I 0.000
MDP0000308970 Malus x domestica MDP0000308970 I 0.000
ppa009716m Prunus persica ppa009716m I 0.000
ppa009964m Prunus persica ppa009964m I 0.000
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.000
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.000
PK29603.1 Cannabis sativa PK29603.1 I 0.000
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.000
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.000
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.000
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.000
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.000
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.000
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.000
SB01G038700 Sorghum bicolor Sb01g038700 I 0.000
SB04G030020 Sorghum bicolor Sb04g030020 I 0.000
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.000
29923.m000811 Ricinus communis 29923.m000811 I 0.000
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.000
29983.m003293 Ricinus communis 29983.m003293 I 0.000
mgf002440m Mimulus guttatus mgf002440m N 0.000
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.000
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.000
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.000
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.000
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.000
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.000
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.000