MDP0000184420 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000184420 T57402_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.838
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000184420 RRM 32 99

Links

Other RRM family RBPs
Other Malus x domestica RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009716m Prunus persica ppa009716m I 0.926
MDP0000284454 Malus x domestica MDP0000284454 I 0.912
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.882
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.868
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.868
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.868
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.853
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.853
mgf017214m Mimulus guttatus mgf017214m I 0.853
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.838
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.838
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.824
PK21213.1 Cannabis sativa PK21213.1 I 0.824
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.809
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.809
CU179634_3 Medicago truncatula CU179634_3 I 0.809
ppa009964m Prunus persica ppa009964m I 0.809
MDP0000138486 Malus x domestica MDP0000138486 I 0.794
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.783
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.783
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.779
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.779
30076.m004440 Ricinus communis 30076.m004440 I 0.779
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.779
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.765
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.765
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.765
MDP0000488395 Malus x domestica MDP0000488395 I 0.765
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.765
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.765
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.765
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.765
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.765
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.754
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.750
PK14266.1 Cannabis sativa PK14266.1 I 0.750
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.750
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.750
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.750
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.750
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.750
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.750
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.750
ppa016222m Prunus persica ppa016222m I 0.750
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.750
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.739
PK15672.1 Cannabis sativa PK15672.1 I 0.739
ppa019392m Prunus persica ppa019392m I 0.739
ppa018926m Prunus persica ppa018926m I 0.739
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.739
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.739
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.739
MDP0000134468 Malus x domestica MDP0000134468 I 0.735
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.735
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.735
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.735
SB04G030020 Sorghum bicolor Sb04g030020 I 0.735
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.735
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.725
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.725
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.725
ppa018603m Prunus persica ppa018603m I 0.725
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.725
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.721
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.721
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.710
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.710
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.710
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.710
MDP0000857317 Malus x domestica MDP0000857317 I 0.710
MDP0000118777 Malus x domestica MDP0000118777 I 0.710
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.706
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.706
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.706
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.706
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.706
SB03G046430 Sorghum bicolor Sb03g046430 N 0.706
MDP0000233609 Malus x domestica MDP0000233609 I 0.706
29908.m006046 Ricinus communis 29908.m006046 I 0.706
SB01G038700 Sorghum bicolor Sb01g038700 I 0.706
29983.m003293 Ricinus communis 29983.m003293 I 0.706
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.706
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.706
29923.m000811 Ricinus communis 29923.m000811 I 0.706