GRMZM2G042195 (Zea mays)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GRMZM2G042195 T54032_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G042195_P01 RRM 41 86
GRMZM2G042195_P02 RRM 41 108
GRMZM2G042195_P03 RRM 41 108

Links

Other RRM family RBPs
Other Zea mays RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB04G030020 Sorghum bicolor Sb04g030020 I 0.971
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.956
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.912
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.912
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.897
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.779
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.779
mgf017214m Mimulus guttatus mgf017214m I 0.779
ppa009964m Prunus persica ppa009964m I 0.765
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.765
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.765
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.765
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
MDP0000138486 Malus x domestica MDP0000138486 I 0.765
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.750
CU179634_3 Medicago truncatula CU179634_3 I 0.750
PK21213.1 Cannabis sativa PK21213.1 I 0.750
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.750
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.739
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.735
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.735
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.735
MDP0000184420 Malus x domestica MDP0000184420 I 0.735
ppa009716m Prunus persica ppa009716m I 0.735
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.725
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.725
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.721
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.721
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.721
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.721
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.721
MDP0000284454 Malus x domestica MDP0000284454 I 0.721
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.721
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.721
SB01G038700 Sorghum bicolor Sb01g038700 I 0.721
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.721
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.706
BRADI1G65785 Brachypodium distachyon BRADI1G65785 N 0.702
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.700