amel4_ncbi_hmm3751 (Apis mellifera)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 amel4_ncbi_hmm3751 T16691_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.859
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.859
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.819
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.819
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.819
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm3751 CSD 23 93

Links

Other CSD family RBPs
Other Apis mellifera RBPs

187 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ybx2-a Xenopus laevis AAI69706 D 0.819
YB-1 Homo sapiens ENSG00000065978 D 0.833
YBX2 Homo sapiens ENSG00000006047 D 0.792
cey-1 Caenorhabditis elegans F33A8.3 I 0.718
csda Xenopus tropicalis ENSXETG00000016239 I 0.847
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.833
CSDA Vicugna pacos ENSVPAG00000000876 I 0.708
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.833
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.761
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.833
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.792
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.833
yps Drosophila melanogaster FBgn0022959 I 0.930
GF10852 Drosophila ananassae FBgn0087892 I 0.944
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.944
GE20150 Drosophila yakuba FBgn0237472 I 0.930
GK16710 Drosophila willistoni FBgn0218712 I 0.944
GJ14010 Drosophila virilis FBgn0201228 I 0.930
GD12750 Drosophila simulans FBgn0184477 I 0.930
GM24682 Drosophila sechellia FBgn0179545 I 0.930
GL15684 Drosophila persimilis FBgn0153288 I 0.944
GI13673 Drosophila mojavensis FBgn0136428 I 0.930
GH16919 Drosophila grimshawi FBgn0124390 I 0.930
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.778
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.833
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.833
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.819
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.806
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.806
Csda Rattus norvegicus ENSRNOG00000005480 I 0.833
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.833
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.833
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.833
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.792
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.778
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.775
YBX2 Sorex araneus ENSSARG00000000488 I 0.806
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.833
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.833
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.806
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.833
YBX2 Sus scrofa ENSSSCG00000017938 I 0.806
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.746
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.704
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.792
CSDA Sus scrofa ENSSSCG00000000633 I 0.833
CSDA Pan troglodytes ENSPTRG00000004681 I 0.833
ISCW005281 Ixodes scapularis ISCW005281 I 0.789
Q00436 Xenopus laevis Q00436 I 0.833
AAA49716 Xenopus laevis AAA49716 I 0.819
AAA49715 Xenopus laevis AAA49715 I 0.833
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.859
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.803
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.803
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.859
Minc12652 Meloidogyne incognita Minc12652 I 0.732
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.761
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.873
AAA49924 Xenopus laevis AAA49924 I 0.806
AAH41191 Xenopus laevis AAH41191 I 0.833
AAH42217 Xenopus laevis AAH42217 I 0.833
P45441 Xenopus laevis P45441 I 0.806
P21574 Xenopus laevis P21574 I 0.819
P21573 Xenopus laevis P21573 I 0.833
CAA42778 Xenopus laevis CAA42778 I 0.833
AAI69704 Xenopus laevis AAI69704 I 0.819
AAI55915 Xenopus laevis AAI55915 I 0.819
AAI55914 Xenopus laevis AAI55914 I 0.806
AAI30161 Xenopus laevis AAI30161 I 0.833
AAI06324 Xenopus laevis AAI06324 I 0.833
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.901
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.775
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.819
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.775
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.775
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.718
146547 Helobdella robusta 146547 I 0.704
133388 Helobdella robusta 133388 I 0.704
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.775
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.732
PHUM156720 Pediculus humanus PHUM156720 I 0.930
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.803
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.761
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.873
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.873
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.708
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.718
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.775
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.789
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.704
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.789
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.761
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.732
PHUM156710 Pediculus humanus PHUM156710 I 0.915
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.833
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.833
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.761
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.732
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.806
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.819
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.789
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.833
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.704
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.736
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.833
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.833
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.761
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.778
Csda Dipodomys ordii ENSDORG00000009103 I 0.833
ybx1 Danio rerio ENSDARG00000004757 I 0.833
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.750
CSDA Cavia porcellus ENSCPOG00000011329 I 0.833
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.833
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.806
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.718
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.764
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.775
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.761
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.761
CBN16711 Caenorhabditis brenneri CBN16711 I 0.718
CBG02981 Caenorhabditis briggsae CBG02981 I 0.704
AGAP006108 Anopheles gambiae AGAP006108 I 0.887
AAEL001375 Aedes aegypti AAEL001375 I 0.901
nasonia_NCBI_hmm1188384 Nasonia vitripennis nasonia_NCBI_hmm1188384 I 0.803
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.901
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 1.000
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 1.000
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.732
CRE01789 Caenorhabditis remanei CRE01789 I 0.718
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.806
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.806
YBX2 Canis familiaris ENSCAFG00000016128 I 0.806
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.833
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.819
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.732
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.740
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.833
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.778
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.833
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.833
Bm1_57515 Brugia malayi Bm1_57515 I 0.732
YBX2 Procavia capensis ENSPCAG00000008019 I 0.806
CSDA Monodelphis domestica ENSMODG00000018248 I 0.833
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.792
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.833
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.819
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.806
CSDA Macaca mulatta ENSMMUG00000022469 I 0.833
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.833
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.833
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.806
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.819
Ybx2 Mus musculus ENSMUSG00000018554 I 0.806
Ybx1 Mus musculus ENSMUSG00000028639 I 0.833
CSDA Procavia capensis ENSPCAG00000001397 I 0.778
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.806
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.833
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.806
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.704
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.704
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.833
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.833
Csda Mus musculus ENSMUSG00000030189 I 0.833
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.803
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.775
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.833
CSDA Homo sapiens ENSG00000060138 I 0.833
CSDA Echinops telfairi ENSETEG00000002557 I 0.833
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.833
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.778
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.833
LOC100067336 Equus caballus ENSECAG00000023592 I 0.833
LOC100065107 Equus caballus ENSECAG00000013777 I 0.833
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.819
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.806
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.833
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.833
YBX1 Microcebus murinus ENSMICG00000014984 I 0.833
CSDA Microcebus murinus ENSMICG00000004602 I 0.708
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.833
CSDA Loxodonta africana ENSLAFG00000017247 I 0.833
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.806
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.833
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.806
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.792
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.833
LOC100072964 Equus caballus ENSECAG00000009996 I 0.806