amel4_ncbi_hmm3751 (Apis mellifera)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 amel4_ncbi_hmm3751 T16691_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.859
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.859
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.819
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.819
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.819
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm3751 CSD 23 93

Links

Other CSD family RBPs
Other Apis mellifera RBPs

187 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Homo sapiens ENSG00000151846 D 0.000
PABPC4 Homo sapiens ENSG00000090621 D 0.000
PABPC1 Homo sapiens ENSG00000070756 D 0.000
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.000
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.000
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.000
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.000
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.000
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.000
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.000
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.000
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.000
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.000
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.000
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.000
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.000
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.000
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.000
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.000
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.000
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.000
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.000
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.000
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.000
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.000
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.000
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.000
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.000
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.000
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.000
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.000
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.000
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.000
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.000
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.000
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.000
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.000
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.000
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.000
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.000
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.000
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.000
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.000
AAH52100 Xenopus laevis AAH52100 I 0.000
AAA60936 Xenopus laevis AAA60936 I 0.000
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.000
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.000
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.000
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.000
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.000
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.000
AAH71118 Xenopus laevis AAH71118 I 0.000
AAH72110 Xenopus laevis AAH72110 I 0.000
Q6IP09 Xenopus laevis Q6IP09 I 0.000
Q6GR16 Xenopus laevis Q6GR16 I 0.000
P20965 Xenopus laevis P20965 I 0.000
CAA40721 Xenopus laevis CAA40721 I 0.000
AAK29408 Xenopus laevis AAK29408 I 0.000
AAI08463 Xenopus laevis AAI08463 I 0.000
AAH80020 Xenopus laevis AAH80020 I 0.000
AAH73435 Xenopus laevis AAH73435 I 0.000
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.000
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.000
GH21052 Drosophila grimshawi FBgn0128514 I 0.000
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.000
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.000
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.000
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.000
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.000
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.000
ISCW014211 Ixodes scapularis ISCW014211 I 0.000
PHUM617090 Pediculus humanus PHUM617090 I 0.000
185682 Helobdella robusta 185682 I 0.000
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.000
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.000
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.000
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.000
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.000
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.000
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.000
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.000
Q98SP8 Xenopus laevis Q98SP8 I 0.000
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.000
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.000
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.000
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.000
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.000
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.000
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.000
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.000
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.000
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.000
pabpc1l Danio rerio ENSDARG00000002597 I 0.000
pabpc1a Danio rerio ENSDARG00000017219 I 0.000
PABPC1L Homo sapiens ENSG00000101104 I 0.000
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.000
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.000
LOC100070836 Equus caballus ENSECAG00000022681 I 0.000
LOC100056021 Equus caballus ENSECAG00000020699 I 0.000
LOC100054235 Equus caballus ENSECAG00000009396 I 0.000
pabpc4 Danio rerio ENSDARG00000059259 I 0.000
pabpc1b Danio rerio ENSDARG00000021140 I 0.000
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.000
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.000
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.000
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.000
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.000
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.000
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.000
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.000
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.000
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.000
AAEL010318 Aedes aegypti AAEL010318 I 0.000
AGAP011092 Anopheles gambiae AGAP011092 I 0.000
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.000
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.000
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.000
PABPC1L Bos taurus ENSBTAG00000016849 I 0.000
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.000
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.000
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.000
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.000
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.000
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.000
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.000
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.000
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.000
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.000
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.000
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.000
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.000
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.000
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.000
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.000
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.000
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.000
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.000
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.000
Gm10110 Mus musculus ENSMUSG00000062093 I 0.000
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.000
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.000
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.000
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.000
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.000
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.000
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.000
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.000
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.000
PABPC1L Gallus gallus ENSGALG00000004123 I 0.000
PABPC4 Gallus gallus ENSGALG00000003800 I 0.000
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.000
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.000
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.000
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.000
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.000
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.000
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.000
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.000
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.000
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.000
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.000
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.000
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.000