CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
amel4_ncbi_hmm3751
(
Apis mellifera
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
amel4_ncbi_hmm3751
T16691_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
YB-1
M111_0.6
Homo sapiens
AACAUCD
RNAcompete
Ray et al.(2013)
RNCMPT00116
0.859
YB-1
M081_0.6
Homo sapiens
AACAUC
RNAcompete
Ray et al.(2013)
RNCMPT00083
0.859
ybx2-a
M260_0.6
Xenopus laevis
GCCANACCAYCGC
SELEX
Cook et al.(2011)
130_11376140
0.819
ybx2-a
M254_0.6
Xenopus laevis
KAACAUCU
SELEX
Cook et al.(2011)
115_7499328
0.819
ybx2-a
M250_0.6
Xenopus laevis
UAACAUC
SELEX
Cook et al.(2011)
114_7499328
0.819
YBX2
M082_0.6
Homo sapiens
AACAWCD
RNAcompete
Ray et al.(2013)
RNCMPT00084
0.792
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm3751
CSD
23
93
KVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVVIGEKGHEAANVTGP
Links
Other
CSD
family RBPs
Other
Apis mellifera
RBPs
187 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
aret
Drosophila melanogaster
FBgn0000114
D
0.000
GA25725-RB
Drosophila pseudoobscura
FBgn0247102
I
0.000
GE18580
Drosophila yakuba
FBgn0235987
I
0.000
GK15495
Drosophila willistoni
FBgn0217500
I
0.000
GK15493
Drosophila willistoni
FBgn0217498
I
0.000
GJ17718
Drosophila virilis
FBgn0204887
I
0.000
GJ17715
Drosophila virilis
FBgn0204884
I
0.000
GD23828
Drosophila simulans
FBgn0195198
I
0.000
GM26763
Drosophila sechellia
FBgn0181616
I
0.000
GL18624
Drosophila persimilis
FBgn0156225
I
0.000
GH11645
Drosophila grimshawi
FBgn0119125
I
0.000
GH11642
Drosophila grimshawi
FBgn0119122
I
0.000
GG23776
Drosophila erecta
FBgn0115915
I
0.000
GF14192
Drosophila ananassae
FBgn0091219
I
0.000
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.000