amel4_ncbi_hmm3751 (Apis mellifera)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 amel4_ncbi_hmm3751 T16691_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.859
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.859
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.819
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.819
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.819
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm3751 CSD 23 93

Links

Other CSD family RBPs
Other Apis mellifera RBPs

187 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
aret Drosophila melanogaster FBgn0000114 D 0.000
GA25725-RB Drosophila pseudoobscura FBgn0247102 I 0.000
GE18580 Drosophila yakuba FBgn0235987 I 0.000
GK15495 Drosophila willistoni FBgn0217500 I 0.000
GK15493 Drosophila willistoni FBgn0217498 I 0.000
GJ17718 Drosophila virilis FBgn0204887 I 0.000
GJ17715 Drosophila virilis FBgn0204884 I 0.000
GD23828 Drosophila simulans FBgn0195198 I 0.000
GM26763 Drosophila sechellia FBgn0181616 I 0.000
GL18624 Drosophila persimilis FBgn0156225 I 0.000
GH11645 Drosophila grimshawi FBgn0119125 I 0.000
GH11642 Drosophila grimshawi FBgn0119122 I 0.000
GG23776 Drosophila erecta FBgn0115915 I 0.000
GF14192 Drosophila ananassae FBgn0091219 I 0.000
FBgn0262475 Drosophila melanogaster FBgn0262475 I 0.000