ENSPPYG00000004279 (Pongo pygmaeus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSPPYG00000004279 T16977_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000004886 CSD 89 159

Links

Other CSD family RBPs
Other Pongo pygmaeus RBPs

213 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX2 Homo sapiens ENSG00000006047 D 0.944
ybx2-a Xenopus laevis AAI69706 D 0.958
YB-1 Homo sapiens ENSG00000065978 D 1.000
Csda Mus musculus ENSMUSG00000030189 I 1.000
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 1.000
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.986
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.958
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.972
Csda Rattus norvegicus ENSRNOG00000005480 I 1.000
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.944
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.861
YBX2 Sorex araneus ENSSARG00000000488 I 0.944
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.708
CSDA Sus scrofa ENSSSCG00000000633 I 1.000
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.944
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.861
CSDA Pteropus vampyrus ENSPVAG00000006740 I 1.000
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 1.000
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.944
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 1.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 1.000
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.750
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.716
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.732
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.000
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.958
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 1.000
CSDA Procavia capensis ENSPCAG00000001397 I 0.930
YBX2 Procavia capensis ENSPCAG00000008019 I 0.958
YBX1 Procavia capensis ENSPCAG00000008397 I 0.708
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 1.000
CSDA Pan troglodytes ENSPTRG00000004681 I 1.000
YBX2 Sus scrofa ENSSSCG00000017938 I 0.958
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 1.000
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.000
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.708
AAA49715 Xenopus laevis AAA49715 I 1.000
AAA49716 Xenopus laevis AAA49716 I 0.958
AAA49924 Xenopus laevis AAA49924 I 0.944
AAH41191 Xenopus laevis AAH41191 I 1.000
AAH42217 Xenopus laevis AAH42217 I 1.000
AAI06324 Xenopus laevis AAI06324 I 1.000
AAI30161 Xenopus laevis AAI30161 I 1.000
AAI55914 Xenopus laevis AAI55914 I 0.944
AAI55915 Xenopus laevis AAI55915 I 0.958
AAI69704 Xenopus laevis AAI69704 I 0.958
CAA42778 Xenopus laevis CAA42778 I 1.000
P21573 Xenopus laevis P21573 I 1.000
P21574 Xenopus laevis P21574 I 0.958
Q00436 Xenopus laevis Q00436 I 1.000
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.722
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.875
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.958
CSDA Tupaia belangeri ENSTBEG00000012570 I 1.000
CSDA Taeniopygia guttata ENSTGUG00000012047 I 1.000
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 1.000
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 1.000
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 1.000
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.873
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.718
YBX1 Vicugna pacos ENSVPAG00000000068 I 1.000
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.000
ybx1 Xenopus tropicalis ENSXETG00000013436 I 1.000
csda Xenopus tropicalis ENSXETG00000016239 I 0.958
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.930
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.875
P45441 Xenopus laevis P45441 I 0.944
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.972
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.930
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.958
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 1.000
CSDA Cavia porcellus ENSCPOG00000011329 I 1.000
ybx1 Danio rerio ENSDARG00000004757 I 1.000
Csda Dipodomys ordii ENSDORG00000009103 I 1.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 1.000
LOC100072964 Equus caballus ENSECAG00000009996 I 0.958
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.986
LOC100065107 Equus caballus ENSECAG00000013777 I 1.000
LOC100067336 Equus caballus ENSECAG00000023592 I 1.000
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 1.000
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.944
CSDA Erinaceus europaeus ENSEEUG00000010415 I 1.000
CSDA Echinops telfairi ENSETEG00000002557 I 1.000
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.889
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.944
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.831
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.958
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 1.000
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 1.000
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.944
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 1.000
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.986
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 1.000
YBX2 Canis familiaris ENSCAFG00000016128 I 0.958
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 1.000
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 1.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.861
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.972
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.958
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.889
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 1.000
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.708
YBX2 Microcebus murinus ENSMICG00000012453 I 0.000
CSDA Monodelphis domestica ENSMODG00000018248 I 0.986
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.944
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 1.000
YBX1 Microcebus murinus ENSMICG00000014984 I 1.000
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.889
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.972
CSDA Myotis lucifugus ENSMLUG00000007476 I 1.000
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 1.000
CSDA Macaca mulatta ENSMMUG00000022469 I 1.000
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.958
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.986
YBX1 Monodelphis domestica ENSMODG00000017214 I 1.000
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.944
CSDA Loxodonta africana ENSLAFG00000017247 I 1.000
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.958
CSDA Felis catus ENSFCAG00000018959 I 0.708
CSDA Homo sapiens ENSG00000060138 I 1.000
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 1.000
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 1.000
Ybx1 Mus musculus ENSMUSG00000028639 I 1.000
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 1.000
CSDA Gorilla gorilla ENSGGOG00000001352 I 1.000
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.778
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.944
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.972
Ybx2 Mus musculus ENSMUSG00000018554 I 0.958
YBX1 Loxodonta africana ENSLAFG00000007597 I 1.000
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.000
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.000
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.000
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.000
YBX1 Felis catus ENSFCAG00000015376 N 0.000
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.000
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.000
YBX1 Macropus eugenii ENSMEUG00000009893 N 0.000
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.000
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.000
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.000