Cucsa.130740 (Cucumis sativus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Cucsa.130740 T20708_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.130740.1 KH 145 219
Cucsa.130740.2 KH 145 219
Cucsa.130740.3 KH 144 218
Cucsa.130740.4 KH 101 176

Links

Other KH family RBPs
Other Cucumis sativus RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009701m Prunus persica ppa009701m N 0.987
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.750
GRMZM2G093006 Zea mays GRMZM2G093006 N 0.706
GRMZM2G085582 Zea mays GRMZM2G085582 N 0.729
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.776
AC218972.3_FG007 Zea mays AC218972.3_FG007 N 0.706
mgf011994m Mimulus guttatus mgf011994m N 0.776
mgf005196m Mimulus guttatus mgf005196m N 0.960
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.973
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.795
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.920
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.867
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.840
GRMZM2G122569 Zea mays GRMZM2G122569 N 0.738
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.803
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.853
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.880
MDP0000665847 Malus x domestica MDP0000665847 N 0.960
MDP0000501473 Malus x domestica MDP0000501473 N 0.933
MDP0000186494 Malus x domestica MDP0000186494 N 0.960
MDP0000119110 Malus x domestica MDP0000119110 N 0.933
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.973
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.702
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.908
Medtr8g005390 Medicago truncatula Medtr8g005390 N 0.933
Medtr8g005290 Medicago truncatula Medtr8g005290 N 0.933
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.934
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.723
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.987
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.855
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.867
LOC_Os05g40290 Oryza sativa LOC_Os05g40290 N 0.718
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.760
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.880
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.711
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.859
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.853
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.750
BGIOSIBCE019437 Oryza indica BGIOSIBCE019437 N 0.718
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.733
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.867
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.859
PK23097.1 Cannabis sativa PK23097.1 N 0.947
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.961
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.760
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.847
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.921
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.933
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.747
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.893
29945.m000086 Ricinus communis 29945.m000086 N 0.760
27955.m000377 Ricinus communis 27955.m000377 N 0.920
SB09G023640 Sorghum bicolor Sb09g023640 N 0.726
SB03G038070 Sorghum bicolor Sb03g038070 N 0.718
SB02G006770 Sorghum bicolor Sb02g006770 N 0.803
SB01G003680 Sorghum bicolor Sb01g003680 N 0.763
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.827
PK22673.1 Cannabis sativa PK22673.1 N 0.893