fgenesh2_pg.scaffold_166000022 (Branchiostoma floridae)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_pg.scaffold_166000022 T21108_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.783
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.730
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.725
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.720
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_166000022 KH 21 81
fgenesh2_pg.scaffold_166000022 KH 104 167
fgenesh2_pg.scaffold_166000022 KH 247 309

Links

Other KH family RBPs
Other Branchiostoma floridae RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PCBP2 Homo sapiens ENSG00000197111 D 0.730
pcbp2 Danio rerio ENSDARG00000013184 D 0.725
PCBP1 Homo sapiens ENSG00000169564 D 0.720
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.783
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.720
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.730
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.720
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.730
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.720
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.783
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.730
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.783
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.720
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.720
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.730
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.730
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.730
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.709
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.740
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.730
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.737
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.720
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.725
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.783
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.762
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.730
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.772
ISCW016289 Ixodes scapularis ISCW016289 I 0.766
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 1.000
fgenesh1_pm.C_scaffold_76000004 Capitella teleta fgenesh1_pm.C_scaffold_76000004 I 0.766
PASA_GEN_0700132 Daphnia pulex PASA_GEN_0700132 I 0.738
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.720
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.709
AAH41241 Xenopus laevis AAH41241 I 0.725
AAH84195 Xenopus laevis AAH84195 I 0.725
CAB50743 Xenopus laevis CAB50743 I 0.725
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.725
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.730
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.783
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.778
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.767
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.714
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.702
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.707
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.720
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.704
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.767
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.725
CAD29864 Xenopus laevis CAD29864 I 0.725
amel4_ncbi_hmm16330 Apis mellifera amel4_ncbi_hmm16330 I 0.728
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.725
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.709
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.725
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.730
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.783
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.720
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.730
LOC100050579 Equus caballus ENSECAG00000002544 I 0.720
LOC100050101 Equus caballus ENSECAG00000012413 I 0.783
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.783
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.709
DGIL_AUG5s5532g9t1 Acyrtosiphon pisum DGIL_AUG5s5532g9t1 I 0.734
nasonia_NCBI_hmm938274 Nasonia vitripennis nasonia_NCBI_hmm938274 I 0.770
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.730
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.783
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.778
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.720
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.730
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.772
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.730
PCBP2 Equus caballus ENSECAG00000022389 I 0.730
PCBP3 Homo sapiens ENSG00000183570 I 0.783
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.762
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.709
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.741
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.783
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.751
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.730
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.704
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.720
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.783
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.730
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.730
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.720
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.702
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.741
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.725
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.714
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.762
PCBP3 Gallus gallus ENSGALG00000004394 I 0.762
PCBP3 Gallus gallus ENSGALG00000013155 I 0.783
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.783
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.730
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.730
AGAP004942 Anopheles gambiae AGAP004942 N 0.723