fgenesh2_pg.scaffold_166000022 (Branchiostoma floridae)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh2_pg.scaffold_166000022 T21108_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.783
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.730
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.725
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.720
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_166000022 KH 21 81
fgenesh2_pg.scaffold_166000022 KH 104 167
fgenesh2_pg.scaffold_166000022 KH 247 309

Links

Other KH family RBPs
Other Branchiostoma floridae RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.000
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.000
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.000
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.000
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.000
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.000
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.000
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.000
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.000
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.000
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.000
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.000
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.000
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.000
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.000
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.000
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.000
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.000
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.000
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.000
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.000
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.000
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.000
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.000
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.000
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.000
AAI61702 Xenopus laevis AAI61702 I 0.000
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.000
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.000
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.000
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.000
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.000
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.000
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.000
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.000
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.000
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.000
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.000
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.000
HNRNPR Sorex araneus ENSSARG00000001732 I 0.000
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.000
AAH70529 Xenopus laevis AAH70529 I 0.000
Syncrip Mus musculus ENSMUSG00000032423 I 0.000
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.000
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.000
syncripl Danio rerio ENSDARG00000026723 I 0.000
syncrip Danio rerio ENSDARG00000040184 I 0.000
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.000
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.000
LOC100070472 Equus caballus ENSECAG00000012464 I 0.000
HNRNPR Equus caballus ENSECAG00000013733 I 0.000
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.000
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.000
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.000
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.000
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.000
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.000
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.000
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.000
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.000
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.000
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.000
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.000
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.000
HNRNPR Homo sapiens ENSG00000125944 I 0.000
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.000
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.000
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.000
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.000
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.000
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.000
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.000
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.000
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.000
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.000
SYNCRIP Homo sapiens ENSG00000135316 I 0.000
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.000
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.000
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.000
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.000
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.000
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.000
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.000
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.000