SRSF5 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000009268 T40167_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000011623 RRM 6 68
ENSORLP00000011623 RRM 112 177
ENSORLP00000011626 RRM 6 68
ENSORLP00000011626 RRM 170 225
ENSORLP00000011627 RRM 6 68

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF5 Homo sapiens ENSG00000100650 D 0.814
B52 Drosophila melanogaster FBgn0004587 D 0.729
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.814
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.760
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.000
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.822
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.829
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.729
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.000
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.729
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.806
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.000
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.729
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.806
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.814
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.814
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.760
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.814
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.752
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.000
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.721
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.760
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.000
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.760
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.814
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.000
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.760
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.814
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.000
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.814
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.000
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.752
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.760
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.814
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.713
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.705
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.752
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.775
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.713
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.000
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.736
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.814
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.760
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.775
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.775
AAH44265 Xenopus laevis AAH44265 I 0.000
AAH46668 Xenopus laevis AAH46668 I 0.000
PHUM290500 Pediculus humanus PHUM290500 I 0.736
ISCW014220 Ixodes scapularis ISCW014220 I 0.713
ISCW010322 Ixodes scapularis ISCW010322 I 0.736
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.814
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.822
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.000
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.853
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.000
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.729
GF17608 Drosophila ananassae FBgn0094626 I 0.729
GH18528 Drosophila grimshawi FBgn0125995 I 0.729
GI22065 Drosophila mojavensis FBgn0144794 I 0.729
GL23543 Drosophila persimilis FBgn0161133 I 0.729
GJ24113 Drosophila virilis FBgn0211197 I 0.729
GK13948 Drosophila willistoni FBgn0215954 I 0.729
ISCW010321 Ixodes scapularis ISCW010321 I 0.705
AAH71160 Xenopus laevis AAH71160 I 0.853
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.729
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.760
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.000
srsf6a Danio rerio ENSDARG00000013729 I 0.000
srsf6b Danio rerio ENSDARG00000016783 I 0.000
srsf5a Danio rerio ENSDARG00000029818 I 0.915
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.760
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.000
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.000
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.760
LOC100053264 Equus caballus ENSECAG00000026873 I 0.814
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.760
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.000
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.806
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.814
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.000
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.705
AGAP004592 Anopheles gambiae AGAP004592 I 0.713
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.729
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.000
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.822
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.860
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.705
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.814
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.760
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.814
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.760
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.814
SRSF5 Felis catus ENSFCAG00000008848 I 0.814
SRSF4 Homo sapiens ENSG00000116350 I 0.760
SRSF6 Homo sapiens ENSG00000124193 I 0.000
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.814
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.760
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.814
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.000
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.760
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.822
Srsf6 Mus musculus ENSMUSG00000016921 I 0.000
Srsf5 Mus musculus ENSMUSG00000021134 I 0.814
Srsf4 Mus musculus ENSMUSG00000028911 I 0.760
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.760
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.814
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.000
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.760
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.721
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
srsf5b Danio rerio ENSDARG00000027734 I 0.798
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.806
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.000
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.814
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.760
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.000
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.806
SFRS4 Gallus gallus ENSGALG00000001411 N 0.000
SRSF6_RABIT Oryctolagus cuniculus ENSOCUG00000009785 N 0.000
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.705
SRSF6 Gallus gallus ENSGALG00000000990 N 0.000
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.000
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.000
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.000
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.000
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.000
SRSF6 Choloepus hoffmanni ENSCHOG00000000561 N 0.000
SRSF6 Otolemur garnettii ENSOGAG00000014468 N 0.000