CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM25
(
Pan troglodytes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPTRG00000006509
T40674_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000011043
RRM
89
158
VFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKLL
Links
Other
RRM
family RBPs
Other
Pan troglodytes
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK13311.1
Cannabis sativa
PK13311.1
N
0.000
Glyma13g11650.1
Glycine max
Glyma13g11650.1
N
0.000
mgf019396m
Mimulus guttatus
mgf019396m
N
0.000
Medtr3g106660
Medicago truncatula
Medtr3g106660
N
0.000
chr2.LjT32G18.130.nc
Lotus japonicus
chr2.LjT32G18.130.nc
N
0.000
LjSGA_018192.1
Lotus japonicus
LjSGA_018192.1
N
0.000
MDP0000191633
Malus x domestica
MDP0000191633
N
0.000
MDP0000202850
Malus x domestica
MDP0000202850
N
0.000
MDP0000220851
Malus x domestica
MDP0000220851
N
0.000
MDP0000288646
Malus x domestica
MDP0000288646
N
0.000
MDP0000908645
Malus x domestica
MDP0000908645
N
0.000
PDK_20s1363571g001
Phoenix dactylifera
PDK_20s1363571g001
N
0.000
ppa006963m
Prunus persica
ppa006963m
N
0.000
Glyma05g09040.1
Glycine max
Glyma05g09040.1
N
0.000
Cucsa.340040
Cucumis sativus
Cucsa.340040
N
0.000
Cucsa.240780
Cucumis sativus
Cucsa.240780
N
0.000
PK22392.1
Cannabis sativa
PK22392.1
N
0.000
AT3G13224
Arabidopsis thaliana
AT3G13224-TAIR-G
N
0.000
XM_002882764.1
Arabidopsis lyrata
fgenesh2_kg.3__1405__AT3G13224.1
N
0.000
GSVIVG00012784001
Vitis vinifera
GSVIVG00012784001
N
0.000
GSVIVG00014729001
Vitis vinifera
GSVIVG00014729001
N
0.000
B9GI65_POPTR
Populus trichocarpa
POPTR_0001s35360
N
0.000
B9GFZ7_POPTR
Populus trichocarpa
POPTR_0001s37920
N
0.000
29629.m001425
Ricinus communis
29629.m001425
N
0.000
29917.m002004
Ricinus communis
29917.m002004
N
0.000
cassava24310.valid.m1
Manihot esculenta
cassava24310.valid.m1
N
0.000
cassava7031.valid.m1
Manihot esculenta
cassava7031.valid.m1
N
0.000
cassava897.valid.m1
Manihot esculenta
cassava897.valid.m1
N
0.000
ppa007812m
Prunus persica
ppa007812m
N
0.000