XM_002882764.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.3__1405__AT3G13224.1 T44513_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__1405__AT3G13224.1 RRM 21 89
fgenesh2_kg.3__1405__AT3G13224.1 RRM 111 180

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.978
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.857
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.850
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.843
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.843
29629.m001425 Ricinus communis 29629.m001425 N 0.843
MDP0000202850 Malus x domestica MDP0000202850 N 0.843
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.836
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.836
ppa006963m Prunus persica ppa006963m N 0.836
PK22392.1 Cannabis sativa PK22392.1 N 0.836
MDP0000191633 Malus x domestica MDP0000191633 N 0.821
MDP0000220851 Malus x domestica MDP0000220851 N 0.821
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.771
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.764
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.764
mgf019396m Mimulus guttatus mgf019396m N 0.757
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.757
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.757
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.757
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.757
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.750
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.743
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.729
ppa007812m Prunus persica ppa007812m N 0.729
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.723
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.723
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.714
29917.m002004 Ricinus communis 29917.m002004 N 0.714
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.707
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.707
ppa007179m Prunus persica ppa007179m N 0.707
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.707
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.707
MDP0000303054 Malus x domestica MDP0000303054 N 0.700
MDP0000270712 Malus x domestica MDP0000270712 N 0.700