LjSGA_018192.1 (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LjSGA_018192.1 T57192_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_018192.1 RRM 20 88
LjSGA_018192.1 RRM 108 178

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.929
mgf019396m Mimulus guttatus mgf019396m N 0.893
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.864
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.850
ppa007812m Prunus persica ppa007812m N 0.843
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.814
MDP0000191633 Malus x domestica MDP0000191633 N 0.800
MDP0000220851 Malus x domestica MDP0000220851 N 0.800
MDP0000202850 Malus x domestica MDP0000202850 N 0.800
ppa006963m Prunus persica ppa006963m N 0.793
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.786
MDP0000288646 Malus x domestica MDP0000288646 N 0.786
29629.m001425 Ricinus communis 29629.m001425 N 0.786
MDP0000908645 Malus x domestica MDP0000908645 N 0.786
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.779
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.779
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.779
PK22392.1 Cannabis sativa PK22392.1 N 0.779
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.779
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.764
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.750
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.736
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.730
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.730
SB03G027920 Sorghum bicolor Sb03g027920 N 0.716
29917.m002004 Ricinus communis 29917.m002004 N 0.707
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.707
BRADI3G20700 Brachypodium distachyon BRADI3G20700 N 0.702
PDK_20s1371981g001 Phoenix dactylifera PDK_20s1371981g001 N 0.701
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.700
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.700
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.700