AT3G13224 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT3G13224-TAIR-G T32729_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G13224.1-P RRM 21 89
AT3G13224.1-P RRM 111 180
AT3G13224.2-P RRM 21 89
AT3G13224.2-P RRM 111 181

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.978
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.864
29629.m001425 Ricinus communis 29629.m001425 N 0.857
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.857
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.857
MDP0000202850 Malus x domestica MDP0000202850 N 0.857
ppa006963m Prunus persica ppa006963m N 0.850
PK22392.1 Cannabis sativa PK22392.1 N 0.850
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.850
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.850
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.850
MDP0000191633 Malus x domestica MDP0000191633 N 0.836
MDP0000220851 Malus x domestica MDP0000220851 N 0.836
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.771
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.764
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.764
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.764
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.764
mgf019396m Mimulus guttatus mgf019396m N 0.757
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.757
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.757
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.750
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.750
ppa007812m Prunus persica ppa007812m N 0.743
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.729
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.729
29917.m002004 Ricinus communis 29917.m002004 N 0.729
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.729
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.723
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.723
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.721
ppa007179m Prunus persica ppa007179m N 0.721
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.714
PK13311.1 Cannabis sativa PK13311.1 N 0.707
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.707
MDP0000270712 Malus x domestica MDP0000270712 N 0.707
MDP0000908645 Malus x domestica MDP0000908645 N 0.707
MDP0000288646 Malus x domestica MDP0000288646 N 0.707
MDP0000303054 Malus x domestica MDP0000303054 N 0.707
SB03G027920 Sorghum bicolor Sb03g027920 N 0.702
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.700