estExt_Genewise1.C_1000126 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_1000126 T51160_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_1000126 RRM 65 90
estExt_Genewise1.C_1000126 RRM 97 140
estExt_Genewise1.C_1000126 RRM 185 255
estExt_Genewise1.C_1000126 RRM 338 400

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006486m Prunus persica ppa006486m N 0.800
mgf010551m Mimulus guttatus mgf010551m N 0.766
mgf009246m Mimulus guttatus mgf009246m N 0.765
mgf007385m Mimulus guttatus mgf007385m N 0.776
mgf004253m Mimulus guttatus mgf004253m N 0.776
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.796
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.786
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.738
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.745
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.807
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.730
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.755
MDP0000306572 Malus x domestica MDP0000306572 N 0.767
MDP0000288579 Malus x domestica MDP0000288579 N 0.775
MDP0000194332 Malus x domestica MDP0000194332 N 0.767
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.732
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.741
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.761
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.761
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.745
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.737
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.772
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.840
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.825
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.780
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.750
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.755
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.723
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.766
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.741
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.741
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.741
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.728
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.767
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.767
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.767
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.762
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.762
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.762
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.762
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.762
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.786
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.786
SB05G026740 Sorghum bicolor Sb05g026740 N 0.756
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.761