LjSGA_120238.1 (Lotus japonicus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LjSGA_120238.1 T15968_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_120238.1 CCHC ZF 109 126

Links

Other CCHC ZF family RBPs
Other Lotus japonicus RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60936 Xenopus laevis AAA60936 I 0.000
AAEL010318 Aedes aegypti AAEL010318 I 0.000
AAH52100 Xenopus laevis AAH52100 I 0.000
AGAP011092 Anopheles gambiae AGAP011092 I 0.000
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.000
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.000
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.000
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.000
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.000
CAA40721 Xenopus laevis CAA40721 I 0.000
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.000
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.000
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.000
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.000
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.000
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.000
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.000
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.000
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.000
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.000
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.000
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.000
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.000
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.000
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.000
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.000
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.000
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.000
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.000
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.000
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.000
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.000
GH21052 Drosophila grimshawi FBgn0128514 I 0.000
GI18654 Drosophila mojavensis FBgn0141393 I 0.000
GJ21671 Drosophila virilis FBgn0208790 I 0.000
GK19652 Drosophila willistoni FBgn0221650 I 0.000
ISCW014211 Ixodes scapularis ISCW014211 I 0.000
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.000
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.000
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.000
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.000
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.000
P20965 Xenopus laevis P20965 I 0.000
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.000
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.000
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.000
PABPC1 Homo sapiens ENSG00000070756 D 0.000
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.000
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.000
pabpc1a Danio rerio ENSDARG00000017219 I 0.000
pabpc1b Danio rerio ENSDARG00000021140 I 0.000
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.000
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.000
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.000
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.000
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.000
PHUM617090 Pediculus humanus PHUM617090 I 0.000
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.000
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.000
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.000
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.000
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.000