ENSORLG00000003008 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000003008 T40102_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.921
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.921
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.921
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.864
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.842
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000003764 RRM 13 83
ENSORLP00000003764 RRM 101 169
ENSORLP00000003764 RRM 193 261
ENSORLP00000003764 RRM 296 364

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

160 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.925
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.925
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.925
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.925
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.925
pabpc1b Danio rerio ENSDARG00000021140 I 0.921
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.921
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.921
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.921
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.921
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.921
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.921
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.921
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.921
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.921
PABPC1 Homo sapiens ENSG00000070756 D 0.921
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.921
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.921
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.918
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.918
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.914
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.914
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.910
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.910
pabpc1a Danio rerio ENSDARG00000017219 I 0.910
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.910
Q6IP09 Xenopus laevis Q6IP09 I 0.903
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.903
AAI08463 Xenopus laevis AAI08463 I 0.903
AAH72110 Xenopus laevis AAH72110 I 0.903
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.900
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.900
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.896
P20965 Xenopus laevis P20965 I 0.892
AAH52100 Xenopus laevis AAH52100 I 0.892
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.892
CAA40721 Xenopus laevis CAA40721 I 0.892
AAA60936 Xenopus laevis AAA60936 I 0.889
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.885
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.882
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.881
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.878
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.867
PABPC3 Homo sapiens ENSG00000151846 D 0.864
AAH73435 Xenopus laevis AAH73435 I 0.864
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.860
PABPC4 Gallus gallus ENSGALG00000003800 I 0.857
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.853
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.850
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.849
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.849
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.849
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.849
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.846
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.846
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.846
LOC100054235 Equus caballus ENSECAG00000009396 I 0.846
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.846
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.846
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.846
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.846
pabpc4 Danio rerio ENSDARG00000059259 I 0.846
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.842
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.842
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.842
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.842
PABPC4 Homo sapiens ENSG00000090621 D 0.842
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.842
Q98SP8 Xenopus laevis Q98SP8 I 0.842
AAH80020 Xenopus laevis AAH80020 I 0.842
AAK29408 Xenopus laevis AAK29408 I 0.842
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.842
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.839
AAH71118 Xenopus laevis AAH71118 I 0.839
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.839
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.839
Gm10110 Mus musculus ENSMUSG00000062093 I 0.839
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.839
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.839
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.839
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.839
Q6GR16 Xenopus laevis Q6GR16 I 0.839
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.835
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.835
PABPC1L Gallus gallus ENSGALG00000004123 I 0.835
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.835
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.835
pabpc1l Danio rerio ENSDARG00000002597 I 0.824
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.821
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.821
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.820
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.820
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.810
LOC100056021 Equus caballus ENSECAG00000020699 I 0.810
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.810
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.806
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.803
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.802
PABPC1L Bos taurus ENSBTAG00000016849 I 0.796
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.796
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.796
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.796
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.792
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.789
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.789
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.789
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.785
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.785
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.785
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.781
PABPC1L Homo sapiens ENSG00000101104 I 0.781
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.781
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.781
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.778
LOC100070836 Equus caballus ENSECAG00000022681 I 0.778
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.774
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.771
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.771
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.767
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.767
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.763
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.763
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.753
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.753
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.753
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.753
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.749
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.746
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.746
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.746
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.746
ISCW014211 Ixodes scapularis ISCW014211 I 0.743
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.742
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.742
AAEL010318 Aedes aegypti AAEL010318 I 0.739
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.738
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.731
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.731
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.731
AGAP011092 Anopheles gambiae AGAP011092 I 0.731
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.731
PHUM617090 Pediculus humanus PHUM617090 I 0.728
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.727
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.724
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.724
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.721
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.721
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.721
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.720
185682 Helobdella robusta 185682 I 0.720
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.719
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.718
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.718
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.717
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.714
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.708
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.708
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.707
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.701
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.701