BGIBMGA003469 (Bombyx mori)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIBMGA003469 T54962_0.6 SilkDB (2008-Apr-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.771
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.771
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.771
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.764
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.748
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIBMGA003469 RRM 13 83
BGIBMGA003469 RRM 101 170
BGIBMGA003469 RRM 194 264
BGIBMGA003469 RRM 298 366

Links

Other RRM family RBPs
Other Bombyx mori RBPs

148 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.883
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.883
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.883
PHUM617090 Pediculus humanus PHUM617090 I 0.875
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.872
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.872
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.872
AAEL010318 Aedes aegypti AAEL010318 I 0.851
AGAP011092 Anopheles gambiae AGAP011092 I 0.847
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.836
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.836
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.822
ISCW014211 Ixodes scapularis ISCW014211 I 0.805
GK19652 Drosophila willistoni FBgn0221650 I 0.791
GI18654 Drosophila mojavensis FBgn0141393 I 0.787
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.787
GJ21671 Drosophila virilis FBgn0208790 I 0.787
GH21052 Drosophila grimshawi FBgn0128514 I 0.787
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.786
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.786
GL11548 Drosophila persimilis FBgn0149157 I 0.784
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.784
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.779
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.777
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.777
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.777
pabpc1a Danio rerio ENSDARG00000017219 I 0.774
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.774
PABPC1 Homo sapiens ENSG00000070756 D 0.774
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.774
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.774
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.774
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.774
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.774
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.774
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.774
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.774
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.774
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.774
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.774
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.774
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.774
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.772
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.772
pabpc1b Danio rerio ENSDARG00000021140 I 0.771
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.770
P20965 Xenopus laevis P20965 I 0.770
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.770
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.770
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.770
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.770
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.770
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.770
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.770
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.770
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.770
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.770
CAA40721 Xenopus laevis CAA40721 I 0.770
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.770
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.770
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.770
AAH52100 Xenopus laevis AAH52100 I 0.770
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.770
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.770
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.770
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.770
LOC100054235 Equus caballus ENSECAG00000009396 I 0.770
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.770
PABPC4 Homo sapiens ENSG00000090621 D 0.770
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.770
GF12652 Drosophila ananassae FBgn0089688 I 0.770
PABPC4 Gallus gallus ENSGALG00000003800 I 0.767
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.767
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.767
AAH73435 Xenopus laevis AAH73435 I 0.767
AAA60936 Xenopus laevis AAA60936 I 0.767
GG21846 Drosophila erecta FBgn0114024 I 0.766
GE11925 Drosophila yakuba FBgn0229707 I 0.766
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.765
Gm10110 Mus musculus ENSMUSG00000062093 I 0.763
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.763
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.763
GD11341 Drosophila simulans FBgn0183090 I 0.762
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.761
Q6IP09 Xenopus laevis Q6IP09 I 0.760
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.760
AAH72110 Xenopus laevis AAH72110 I 0.760
pabpc4 Danio rerio ENSDARG00000059259 I 0.760
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.760
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.760
AAI08463 Xenopus laevis AAI08463 I 0.760
GM21847 Drosophila sechellia FBgn0176724 I 0.759
pAbp Drosophila melanogaster FBgn0261619 D 0.759
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.756
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.756
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.756
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.756
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.753
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.753
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.753
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.749
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.749
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.747
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.746
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.742
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.741
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.741
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.739
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.737
185682 Helobdella robusta 185682 I 0.737
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.735
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.731
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.731
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.731
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.727
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.726
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.724
PABPC3 Homo sapiens ENSG00000151846 D 0.724
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.724
AAH80020 Xenopus laevis AAH80020 I 0.724
Q98SP8 Xenopus laevis Q98SP8 I 0.724
AAK29408 Xenopus laevis AAK29408 I 0.724
Q6GR16 Xenopus laevis Q6GR16 I 0.721
pabpc1l Danio rerio ENSDARG00000002597 I 0.721
AAH71118 Xenopus laevis AAH71118 I 0.721
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.719
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.717
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.717
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.717
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.717
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.714
PABPC1L Gallus gallus ENSGALG00000004123 I 0.714
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.714
Bm1_06880 Brugia malayi Bm1_06880 I 0.713
LOAG_01058 Loa loa LOAG_01058 I 0.713
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.713
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.713
Bm1_16080 Brugia malayi Bm1_16080 I 0.713
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.710
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.710
PABPC1L Bos taurus ENSBTAG00000016849 I 0.707
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.707
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.707
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.707
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.704
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.703
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.703
CBG07431 Caenorhabditis briggsae CBG07431 N 0.702