ISCW005281 (Ixodes scapularis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ISCW005281 T17120_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.831
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.831
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.806
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.792
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.792
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW005281-PA CSD 16 86

Links

Other CSD family RBPs
Other Ixodes scapularis RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT5G04810 Arabidopsis thaliana AT5G04810-TAIR-G N 0.000
cassava4432.m1 Manihot esculenta cassava4432.m1 N 0.000
MDP0000234914 Malus x domestica MDP0000234914 N 0.000
PK19527.1 Cannabis sativa PK19527.1 N 0.000
XM_002871069.1 Arabidopsis lyrata fgenesh2_kg.6__398__AT5G04810.1 N 0.000