PCBP3 (Otolemur garnettii)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSOGAG00000008044 T19223_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.899
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.782
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.782
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.766
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000007195 KH 26 70
ENSOGAP00000007195 KH 94 157
ENSOGAP00000007195 KH 238 300

Links

Other KH family RBPs
Other Otolemur garnettii RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.761
AAH41241 Xenopus laevis AAH41241 I 0.777
AAH84195 Xenopus laevis AAH84195 I 0.777
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.766
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.983
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.843
CAB50743 Xenopus laevis CAB50743 I 0.777
CAD29864 Xenopus laevis CAD29864 I 0.777
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.782
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.856
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.777
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.782
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.705
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.761
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.761
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.782
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.866
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.782
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.735
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.782
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.766
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.755
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.755
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.782
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.766
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.761
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.770
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.709
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.709
LOC100050101 Equus caballus ENSECAG00000012413 I 0.899
LOC100050579 Equus caballus ENSECAG00000002544 I 0.766
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.820
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.899
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.729
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.766
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.766
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.755
PCBP1 Homo sapiens ENSG00000169564 D 0.766
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.766
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.766
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.766
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.766
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.745
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.739
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.766
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.766
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.782
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.782
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.782
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.782
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.782
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.782
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.782
PCBP2 Homo sapiens ENSG00000197111 D 0.831
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.782
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.821
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.706
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.782
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.782
PCBP2 Equus caballus ENSECAG00000022389 I 0.782
pcbp2 Danio rerio ENSDARG00000013184 D 0.782
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.803
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.782
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.899
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.777
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.878
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.878
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.899
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.902
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.718
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.899
PCBP3 Gallus gallus ENSGALG00000013155 I 0.862
PCBP3 Gallus gallus ENSGALG00000004394 I 0.867
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.872
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.867
PCBP3 Homo sapiens ENSG00000183570 I 0.899
PCBP3 Felis catus ENSFCAG00000014812 I 0.930
PCBP3 Echinops telfairi ENSETEG00000015988 I 0.750
pcbp3 Danio rerio ENSDARG00000054378 I 0.965
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.899
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.971
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.851
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.899
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.831
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.904
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.899
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.899
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.899
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.899
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.930
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.977
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.899
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.862
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.888
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.782