e_gw1.15.409.1 (Daphnia pulex)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 e_gw1.15.409.1 T20744_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG11360
M122_0.6 		Drosophila melanogaster GAGUDW RNAcompete
Ray et al.(2013)
RNCMPT00129 		0.909
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.15.409.1 KH 12 72
e_gw1.15.409.1 KH 113 172

Links

Other KH family RBPs
Other Daphnia pulex RBPs

147 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1L3F4 Xenopus laevis A1L3F4 I 0.909
AAEL012708 Aedes aegypti AAEL012708 I 0.746
AAI28670 Xenopus laevis AAI28670 I 0.901
AAI30070 Xenopus laevis AAI30070 I 0.909
AAI30114 Xenopus laevis AAI30114 I 0.828
AAI30196 Xenopus laevis AAI30196 I 0.844
AAI33220 Xenopus laevis AAI33220 I 0.828
AAI42552 Xenopus laevis AAI42552 I 0.836
AGAP013259 Anopheles gambiae AGAP013259 I 0.746
amel4_ncbi_hmm6985 Apis mellifera amel4_ncbi_hmm6985 I 0.917
Ame_R004658 Ailuropoda melanoleuca Ame_R004658 I 0.909
Ame_R007174 Ailuropoda melanoleuca Ame_R007174 I 0.917
Ame_R011921 Ailuropoda melanoleuca Ame_R011921 I 0.721
Ame_R015561 Ailuropoda melanoleuca Ame_R015561 I 0.836
Aqu1.215178 Amphimedon queenslandica Aqu1.215178 I 0.803
BAH79688 Xenopus laevis BAH79688 I 0.909
BGIBMGA012436 Bombyx mori BGIBMGA012436 I 0.721
CBG05100 Caenorhabditis briggsae CBG05100 I 0.787
CBN20397 Caenorhabditis brenneri CBN20397 I 0.803
CBN24563 Caenorhabditis brenneri CBN24563 I 0.803
CG11360 Drosophila melanogaster FBgn0039920 D 0.893
CJA18034 Caenorhabditis japonica CJA18034 I 0.795
CPIJ010634 Culex quinquefasciatus CPIJ010634 I 0.746
CpipJ_CPIJ010634 Culex pipiens CpipJ_CPIJ010634 I 0.746
CRE03823 Caenorhabditis remanei CRE03823 I 0.820
D3ZFL6_RAT Rattus norvegicus ENSRNOG00000025142 I 0.760
ENSCING00000002603 Ciona intestinalis ENSCING00000002603 I 0.909
ENSCPOG00000008241 Cavia porcellus ENSCPOG00000008241 I 0.910
ENSOCUG00000012549 Oryctolagus cuniculus ENSOCUG00000012549 I 0.909
ENSOCUG00000014295 Oryctolagus cuniculus ENSOCUG00000014295 I 0.770
ENSPPYG00000000729 Pongo pygmaeus ENSPPYG00000000729 I 0.836
ENSPPYG00000006723 Pongo pygmaeus ENSPPYG00000006723 I 0.917
ENSPPYG00000009324 Pongo pygmaeus ENSPPYG00000009324 I 0.844
estExt_fgenesh2_pg.C_2010087 Branchiostoma floridae estExt_fgenesh2_pg.C_2010087 I 0.926
estExt_Genewise1.C_sca_540218 Lottia gigantea estExt_Genewise1.C_sca_540218 I 0.917
e_gw1.3.1475.1 Trichoplax adhaerens e_gw1.3.1475.1 I 0.738
e_gw1.312.50.1 Capitella teleta e_gw1.312.50.1 I 0.744
GA10947-RA Drosophila pseudoobscura FBgn0071003 I 0.893
GD24410 Drosophila simulans FBgn0195748 I 0.893
GE14558 Drosophila yakuba FBgn0232157 I 0.893
GF20555 Drosophila ananassae FBgn0097561 I 0.877
GG16398 Drosophila erecta FBgn0108630 I 0.893
GH23938 Drosophila grimshawi FBgn0131395 I 0.893
GJ18673 Drosophila virilis FBgn0205827 I 0.893
GK13594 Drosophila willistoni FBgn0215602 I 0.893
GL18139 Drosophila persimilis FBgn0155742 I 0.893
GM26809 Drosophila sechellia FBgn0181661 I 0.893
gw.320.9.1 Nematostella vectensis gw.320.9.1 I 0.877
LOC100410023 Callithrix jacchus ENSCJAG00000001902 I 0.909
LOC100410413 Callithrix jacchus ENSCJAG00000007711 I 0.836
mex-3 Caenorhabditis elegans F53G12.5 I 0.811
MEX3A Ochotona princeps ENSOPRG00000002937 I 0.836
MEX3A Monodelphis domestica ENSMODG00000016954 I 0.836
MEX3A Macaca mulatta ENSMMUG00000022307 I 0.836
MEX3A Bos taurus ENSBTAG00000019158 I 0.836
MEX3A Microcebus murinus ENSMICG00000002233 I 0.779
MEX3A Pteropus vampyrus ENSPVAG00000010333 I 0.779
MEX3A Danio rerio ENSDARG00000076638 I 0.844
MEX3A Oryctolagus cuniculus ENSOCUG00000005640 I 0.836
MEX3A Cavia porcellus ENSCPOG00000020219 I 0.836
Mex3a Dipodomys ordii ENSDORG00000002921 I 0.836
MEX3A Gorilla gorilla ENSGGOG00000004513 I 0.836
MEX3A Tursiops truncatus ENSTTRG00000013346 I 0.828
MEX3B Oryctolagus cuniculus ENSOCUG00000011603 I 0.760
MEX3B Otolemur garnettii ENSOGAG00000016362 I 0.727
MEX3B Ochotona princeps ENSOPRG00000009604 I 0.917
MEX3B Procavia capensis ENSPCAG00000014150 I 0.752
MEX3B Sorex araneus ENSSARG00000006007 I 0.752
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.901
MEX3B Tetraodon nigroviridis ENSTNIG00000003398 I 0.901
MEX3B Canis familiaris ENSCAFG00000013759 I 0.760
MEX3B Pan troglodytes ENSPTRG00000007373 I 0.917
MEX3B Pteropus vampyrus ENSPVAG00000000093 I 0.917
MEX3B Equus caballus ENSECAG00000013497 I 0.917
MEX3B Gasterosteus aculeatus ENSGACG00000012530 I 0.876
MEX3B Macropus eugenii ENSMEUG00000002402 I 0.909
MEX3B Gorilla gorilla ENSGGOG00000000597 I 0.917
MEX3B Dasypus novemcinctus ENSDNOG00000012736 I 0.876
MEX3B Macaca mulatta ENSMMUG00000018639 I 0.917
MEX3B Danio rerio ENSDARG00000058369 I 0.909
MEX3B Cavia porcellus ENSCPOG00000023663 I 0.844
MEX3B Homo sapiens ENSG00000183496 I 0.917
MEX3B Anolis carolinensis ENSACAG00000011072 I 0.752
Mex3b Mus musculus ENSMUSG00000057706 I 0.760
MEX3B Bos taurus ENSBTAG00000016630 I 0.917
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.917
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.917
MEX3B Callithrix jacchus ENSCJAG00000008043 I 0.917
mex3c Xenopus tropicalis ENSXETG00000022367 I 0.901
MEX3C Vicugna pacos ENSVPAG00000003137 I 0.744
MEX3C Tursiops truncatus ENSTTRG00000004570 I 0.909
MEX3C Gasterosteus aculeatus ENSGACG00000007490 I 0.901
MEX3C Gorilla gorilla ENSGGOG00000014875 I 0.909
MEX3C Homo sapiens ENSG00000176624 I 0.909
MEX3C Echinops telfairi ENSETEG00000003647 I 0.752
MEX3C Canis familiaris ENSCAFG00000000162 I 0.884
MEX3C Choloepus hoffmanni ENSCHOG00000004915 I 0.909
MEX3C Cavia porcellus ENSCPOG00000009646 I 0.909
MEX3C Danio rerio ENSDARG00000068971 I 0.719
MEX3C Dasypus novemcinctus ENSDNOG00000006544 I 0.909
Mex3c Dipodomys ordii ENSDORG00000007962 I 0.744
MEX3C Anolis carolinensis ENSACAG00000010265 I 0.752
MEX3C Equus caballus ENSECAG00000021727 I 0.909
MEX3C Erinaceus europaeus ENSEEUG00000010864 I 0.744
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.909
MEX3C Tupaia belangeri ENSTBEG00000014438 I 0.744
MEX3C Macaca mulatta ENSMMUG00000023652 I 0.909
MEX3C Pan troglodytes ENSPTRG00000010029 I 0.909
MEX3C Procavia capensis ENSPCAG00000009258 I 0.917
MEX3C Oryzias latipes ENSORLG00000004985 I 0.909
MEX3C Monodelphis domestica ENSMODG00000011001 I 0.909
MEX3C Pteropus vampyrus ENSPVAG00000015135 I 0.909
Mex3c Rattus norvegicus ENSRNOG00000015777 I 0.909
MEX3C Myotis lucifugus ENSMLUG00000012585 I 0.744
MEX3C Macropus eugenii ENSMEUG00000015929 I 0.744
MEX3C Ornithorhynchus anatinus ENSOANG00000008116 I 0.752
Mex3c Mus musculus ENSMUSG00000037253 I 0.909
MEX3C Sorex araneus ENSSARG00000006940 I 0.744
MEX3C Microcebus murinus ENSMICG00000005815 I 0.744
MEX3C Loxodonta africana ENSLAFG00000027818 I 0.909
MEX3D Monodelphis domestica ENSMODG00000004116 I 0.861
MEX3D Procavia capensis ENSPCAG00000010972 I 0.719
MEX3D Ornithorhynchus anatinus ENSOANG00000011764 I 0.828
MEX3D Bos taurus ENSBTAG00000044028 I 0.727
MEX3D Ochotona princeps ENSOPRG00000008708 I 0.719
MEX3D Canis familiaris ENSCAFG00000023712 I 0.727
Mex3d Mus musculus ENSMUSG00000048696 I 0.844
MEX3D Gorilla gorilla ENSGGOG00000001083 I 0.844
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.869
MEX3D Tetraodon nigroviridis ENSTNIG00000015325 I 0.869
MEX3D Tursiops truncatus ENSTTRG00000008132 I 0.844
MEX3D Taeniopygia guttata ENSTGUG00000000201 I 0.861
MEX3D Gallus gallus ENSGALG00000001106 I 0.744
MEX3D Gasterosteus aculeatus ENSGACG00000015299 I 0.861
Mex3d Rattus norvegicus ENSRNOG00000030830 I 0.844
MEX3D Macropus eugenii ENSMEUG00000016404 I 0.861
MEX3D Homo sapiens ENSG00000181588 I 0.844
MEX3D Felis catus ENSFCAG00000002615 I 0.719
MEX3D Meleagris gallopavo ENSMGAG00000002325 I 0.754
MEX3D Pan troglodytes ENSPTRG00000010208 I 0.844
nasonia_NCBI_hmm456104 Nasonia vitripennis nasonia_NCBI_hmm456104 I 0.901
PHUM418100 Pediculus humanus PHUM418100 I 0.762
Q2YDI4_BOVIN Bos taurus ENSBTAG00000014886 I 0.752
SNAPOd2T00016811001 Oikopleura dioica SNAPOd2T00016811001 I 0.738
XP_001175528.1 Strongylocentrotus purpuratus XP_001175528.1 I 0.926
XP_002168292.1 Hydra magnipapillata XP_002168292.1 I 0.877
XP_786425.2 Strongylocentrotus purpuratus XP_786425.2 I 0.926