HNRNPA2B1 (Choloepus hoffmanni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCHOG00000013832 T35345_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.993
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.807
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.807
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.807
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000012250 RRM 9 77
ENSCHOP00000012250 RRM 99 168

Links

Other RRM family RBPs
Other Choloepus hoffmanni RBPs

206 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AGAP004942 Anopheles gambiae AGAP004942 N 0.000
amel4_ncbi_hmm16330 Apis mellifera amel4_ncbi_hmm16330 I 0.000
DGIL_AUG5s5532g9t1 Acyrtosiphon pisum DGIL_AUG5s5532g9t1 I 0.000
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.000
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.000
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.000
e_gw1.66.95.1 Lottia gigantea e_gw1.66.95.1 N 0.000
FBgn0262737 Drosophila melanogaster FBgn0262737 N 0.000
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.000
GA20351-RA Drosophila pseudoobscura FBgn0080346 N 0.000
GE22592 Drosophila yakuba FBgn0239809 N 0.000
GG16232 Drosophila erecta FBgn0108467 N 0.000
GH14429 Drosophila grimshawi FBgn0121905 N 0.000
GI13561 Drosophila mojavensis FBgn0136316 N 0.000
GJ11921 Drosophila virilis FBgn0199174 N 0.000
GK10610 Drosophila willistoni FBgn0212625 N 0.000
ISCW016289 Ixodes scapularis ISCW016289 I 0.000
LOC100050101 Equus caballus ENSECAG00000012413 I 0.000
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.000
nasonia_NCBI_hmm938274 Nasonia vitripennis nasonia_NCBI_hmm938274 I 0.000
PASA_GEN_0700132 Daphnia pulex PASA_GEN_0700132 I 0.000
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.000
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.000
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.000
PCBP3 Homo sapiens ENSG00000183570 I 0.000
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.000
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.000
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.000
PCBP3 Gallus gallus ENSGALG00000013155 I 0.000
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.000
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.000
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.000
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.000
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.000
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.000
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.000
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.000
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.000
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.000
PCBP3 Gallus gallus ENSGALG00000004394 I 0.000
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.000
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.000