ENSCSAVG00000006093 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000006093 T35988_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.780
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.780
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.780
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.780
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.780
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.780
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.780
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.780
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.780
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.780
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000010348 RRM 11 77
ENSCSAVP00000010348 RRM 112 175
ENSCSAVP00000010349 RRM 11 77
ENSCSAVP00000010349 RRM 112 175

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
186029 Helobdella robusta 186029 I 0.705
97475 Helobdella robusta 97475 N 0.740
AAEL006473 Aedes aegypti AAEL006473 I 0.725
AAH42354 Xenopus laevis AAH42354 I 0.773
AAI23123 Xenopus laevis AAI23123 I 0.773
AAI28932 Xenopus laevis AAI28932 I 0.773
AGAP010496 Anopheles gambiae AGAP010496 I 0.702
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.733
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.780
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.702
Bm1_45785 Brugia malayi Bm1_45785 N 0.718
CBG03563 Caenorhabditis briggsae CBG03563 I 0.748
CBN06053 Caenorhabditis brenneri CBN06053 I 0.756
CJA01159 Caenorhabditis japonica CJA01159 I 0.733
CPIJ008786 Culex quinquefasciatus CPIJ008786 I 0.710
CpipJ_CPIJ008786 Culex pipiens CpipJ_CPIJ008786 I 0.710
CRE13382 Caenorhabditis remanei CRE13382 I 0.748
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.780
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.740
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.939
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.758
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.780
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.742
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.765
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.765
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.769
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.780
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.780
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.780
estExt_fgenesh2_pm.C_1180016 Branchiostoma floridae estExt_fgenesh2_pm.C_1180016 I 0.742
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.795
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.748
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.729
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.811
GA20008-RA Drosophila pseudoobscura FBgn0080004 I 0.702
GE26323 Drosophila yakuba FBgn0243353 I 0.710
GF16525 Drosophila ananassae FBgn0093546 I 0.702
GH18077 Drosophila grimshawi FBgn0125545 I 0.702
GK13511 Drosophila willistoni FBgn0215519 I 0.702
GL22249 Drosophila persimilis FBgn0159841 I 0.702
gw.425.18.1 Branchiostoma floridae gw.425.18.1 I 0.727
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.720
ISCW014398 Ixodes scapularis ISCW014398 I 0.756
LOAG_04334 Loa loa LOAG_04334 N 0.718
LOAG_10275 Loa loa LOAG_10275 I 0.710
LOC100056763 Equus caballus ENSECAG00000016654 I 0.780
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.712
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.765
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.720
Minc04015 Meloidogyne incognita Minc04015 I 0.752
Minc06188 Meloidogyne incognita Minc06188 I 0.752
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.740
Ppa-rsp-3 Pristionchus pacificus PPA25378 I 0.765
rsp-3 Caenorhabditis elegans Y111B2A.18 I 0.725
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.780
Sjc_0030490 Schistosoma japonicum Sjc_0030490 I 0.722
Smp_185230 Schistosoma mansoni Smp_185230 I 0.722
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.780
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.773
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.780
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.773
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.780
Srsf1 Mus musculus ENSMUSG00000018379 I 0.780
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.765
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.780
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.765
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.765
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.780
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.765
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.750
SRSF1 Homo sapiens ENSG00000136450 D 0.780
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.780
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.780
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.773
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.780
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.750
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.780
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.729
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.742
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.765
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.780
SRSF1 Sorex araneus ENSSARG00000010949 I 0.765
srsf1a Danio rerio ENSDARG00000057691 I 0.773
WUBG_03274 Wuchereria bancrofti WUBG_03274 N 0.718