ENSRNOG00000043173 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000043173 T41248_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.729
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.729
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.729
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000062421 RRM 9 72
ENSRNOP00000062421 RRM 93 162

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49949 Xenopus laevis AAA49949 I 0.725
AAA49950 Xenopus laevis AAA49950 I 0.727
AAI69881 Xenopus laevis AAI69881 I 0.727
CBF67578 Xenopus laevis CBF67578 I 0.727
CBU92451 Xenopus laevis CBU92451 I 0.727
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.741
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.768
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.752
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.720
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.738
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.716
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.745
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.738
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.787
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.746
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.753
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.759
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.738
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.760
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.703
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.741
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.753
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.842
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.750
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.727
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.801
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.720
ENSPPYG00000013564 Pongo pygmaeus ENSPPYG00000013564 N 0.721
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.703
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.725
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.712
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.759
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.794
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.807
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.830
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.707
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.757
Gm8991 Mus musculus ENSMUSG00000059179 I 0.752
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.753
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.724
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.758
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.705
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.753
HNRNPA3 Homo sapiens ENSG00000170144 I 0.753
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.752
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.753
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.753
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.732
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.709
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.753
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.753
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.753
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.747
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.753
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.753
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.758
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.753
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.711
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.752
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.753
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.752
LOC100066794 Equus caballus ENSECAG00000023237 I 0.758
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.753
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.753
LOC781499 Bos taurus ENSBTAG00000021580 I 0.753
P51968 Xenopus laevis P51968 I 0.725
P51992 Xenopus laevis P51992 I 0.727
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.753