ENSPTRG00000018253 (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000018253 T40759_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.816
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.816
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.816
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.801
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000056555 RRM 5 72
ENSPTRP00000056555 RRM 96 165

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

206 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.964
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.921
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.887
LOC100066794 Equus caballus ENSECAG00000023237 I 0.886
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.886
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.886
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.879
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.879
HNRNPA3 Homo sapiens ENSG00000170144 I 0.879
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.879
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.879
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.879
LOC781499 Bos taurus ENSBTAG00000021580 I 0.879
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.879
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.879
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.879
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.879
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.879
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.879
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.879
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.879
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.879
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.879
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.879
Gm8991 Mus musculus ENSMUSG00000059179 I 0.879
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.879
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.879
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.879
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.879
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.872
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.865
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.857
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.850
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.844
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.844
AAA49949 Xenopus laevis AAA49949 I 0.843
P51968 Xenopus laevis P51968 I 0.843
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.838
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.836
AAI69881 Xenopus laevis AAI69881 I 0.831
CBF67578 Xenopus laevis CBF67578 I 0.831
CBU92451 Xenopus laevis CBU92451 I 0.831
P51992 Xenopus laevis P51992 I 0.831
AAA49950 Xenopus laevis AAA49950 I 0.831
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.830
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.820
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.816
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.807
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.807
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.807
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.807
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.801
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.800
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.800
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.800
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.800
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.800
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.800
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.800
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.800
HNRNPA1 Homo sapiens ENSG00000135486 D 0.800
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.800
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.800
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.800
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.800
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.800
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.800
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.800
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.800
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.800
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.800
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.800
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.800
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.800
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.800
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.800
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.800
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.800
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.794
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.794
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.793
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.793
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.793
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.793
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.793
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.793
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.787
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.787
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.786
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.786
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.786
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.786
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.786
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.786
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.786
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.786
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.786
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.786
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.786
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.779
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.779
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.779
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.779
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.779
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.779
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.779
LOC785445 Bos taurus ENSBTAG00000025621 I 0.773
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.771
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.771
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.771
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.771
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.771
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.771
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.771
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.764
CBF67672 Xenopus laevis CBF67672 I 0.764
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.764
CBU92546 Xenopus laevis CBU92546 I 0.764
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.764
AAH72090 Xenopus laevis AAH72090 I 0.764
AAH45260 Xenopus laevis AAH45260 I 0.764
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.764
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.764
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.761
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.757
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.757
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.757
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.757
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.752
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.750
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.750
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.750
AAA49742 Xenopus laevis AAA49742 I 0.750
CBF67555 Xenopus laevis CBF67555 I 0.750
CBU92428 Xenopus laevis CBU92428 I 0.750
AAA49741 Xenopus laevis AAA49741 I 0.750
P17130 Xenopus laevis P17130 I 0.750
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.750
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.750
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.745
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.745
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.745
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.745
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.743
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.739
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.739
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.738
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.738
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.738
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.738
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.738
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.738
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.735
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.732
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.732
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.732
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.732
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.732
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.732
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.730
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.729
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.728
LOC100054206 Equus caballus ENSECAG00000006699 I 0.725
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.725
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.725
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.725
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.723
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.723
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.723
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.723
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.723
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.721
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.721
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.721
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.718
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.718
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.716
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.716
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.716
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.716
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.714
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.713
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.713
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.711
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.711
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.709
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.709
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.709
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.709
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.709
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.707
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.707
zgc:66127 Danio rerio ENSDARG00000011020 I 0.707
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.706
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.704
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.704
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.703
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.702
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.702
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.702
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.702
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.702
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.700
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.700