srsf6 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000025503 T42960_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.760
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000054329 RRM 4 66
ENSXETP00000054329 RRM 108 173

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MKB3_CALJA Callithrix jacchus ENSCJAG00000018125 N 0.000
A8NJ74_BOVIN Bos taurus ENSBTAG00000000221 N 0.000
Ame_R015227 Ailuropoda melanoleuca Ame_R015227 N 0.000
ARID4B Macaca mulatta ENSMMUG00000007141 N 0.000
D3ZPK9_RAT Rattus norvegicus ENSRNOG00000023341 N 0.000
LOC100146167 Equus caballus ENSECAG00000013333 N 0.000
RBM34 Oryctolagus cuniculus ENSOCUG00000009173 N 0.000
RBM34 Ochotona princeps ENSOPRG00000013930 N 0.000
RBM34 Pan troglodytes ENSPTRG00000032432 N 0.000
RBM34 Pteropus vampyrus ENSPVAG00000015158 N 0.000
Rbm34 Rattus norvegicus ENSRNOG00000020004 N 0.000
RBM34 Sus scrofa ENSSSCG00000010157 N 0.000
RBM34 Tursiops truncatus ENSTTRG00000002216 N 0.000
RBM34 Ornithorhynchus anatinus ENSOANG00000001206 N 0.000
Rbm34 Mus musculus ENSMUSG00000033931 N 0.000
RBM34 Cavia porcellus ENSCPOG00000015213 N 0.000
Rbm34 Dipodomys ordii ENSDORG00000006420 N 0.000
RBM34 Felis catus ENSFCAG00000001852 N 0.000
RBM34 Homo sapiens ENSG00000188739 N 0.000
RBM34 Gorilla gorilla ENSGGOG00000007924 N 0.000
RBM34 Loxodonta africana ENSLAFG00000014289 N 0.000
RBM34 Myotis lucifugus ENSMLUG00000016224 N 0.000
RBM34 Monodelphis domestica ENSMODG00000008436 N 0.000
RBM34 Anolis carolinensis ENSACAG00000001253 N 0.000