estExt_Genewise1.C_5160046 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_5160046 T51286_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_5160046 RRM 37 107

Links

Other RRM family RBPs
Other Capitella teleta RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
2118330B Xenopus laevis 2118330B N 0.817
91084 Helobdella robusta 91084 N 0.831
AAH72902 Xenopus laevis AAH72902 N 0.831
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.775
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.761
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.718
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.817
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.775
Bm1_02935 Brugia malayi Bm1_02935 N 0.746
CAA59259 Xenopus laevis CAA59259 N 0.817
Cbp20 Drosophila melanogaster FBgn0022943 N 0.817
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.803
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.761
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.732
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.000
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.803
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.746
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.704
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.000
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.746
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.761
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.831
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.761
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.746
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.746
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.761
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.761
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.761
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.761
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.803
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.000
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.803
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.775
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.000
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.817
GD19204 Drosophila simulans FBgn0190709 N 0.817
GE25514 Drosophila yakuba FBgn0242580 N 0.817
GF16759 Drosophila ananassae FBgn0093780 N 0.817
GG22670 Drosophila erecta FBgn0114835 N 0.803
GH15101 Drosophila grimshawi FBgn0122576 N 0.817
GI23717 Drosophila mojavensis FBgn0146442 N 0.817
GJ18756 Drosophila virilis FBgn0205908 N 0.831
GJ23276 Drosophila virilis FBgn0210378 N 0.817
GK11244 Drosophila willistoni FBgn0213255 N 0.831
GL12592 Drosophila persimilis FBgn0150198 N 0.817
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.000
GM15280 Drosophila sechellia FBgn0170200 N 0.817
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.746
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.746
LOAG_03270 Loa loa LOAG_03270 N 0.761
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.732
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.761
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.000
Minc02990 Meloidogyne incognita Minc02990 N 0.746
Minc06129 Meloidogyne incognita Minc06129 N 0.746
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.732
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.775
NCBP2 Equus caballus ENSECAG00000016153 N 0.761
NCBP2 Homo sapiens ENSG00000114503 N 0.761
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.732
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.761
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.803
NCBP2 Gallus gallus ENSGALG00000006843 N 0.761
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.761
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.761
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.761
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.761
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.775
ncbp2 Danio rerio ENSDARG00000014898 N 0.803
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.761
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.761
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.746
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.803
NCBP2 Sorex araneus ENSSARG00000014294 N 0.000
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.761
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.775
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.761
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.746
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.746
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.761
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.789
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.789
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.761
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.000
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.718
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.000
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.817
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.831
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.761
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.831
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.803
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.746
P52299 Xenopus laevis P52299 N 0.831
PHUM535920 Pediculus humanus PHUM535920 N 0.789
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.761
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.732
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.000
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.761
SNAPOd2T00014922001 Oikopleura dioica SNAPOd2T00014922001 N 0.000
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.000
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.718
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.761
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.732
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.761
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.732
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.704
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.746
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.746
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.704