XP_002156904.1 (Hydra magnipapillata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_002156904.1 T59030_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.715
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.715
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.715
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_002156904.1 RRM 13 83
XP_002156904.1 RRM 101 170
XP_002156904.1 RRM 194 262
XP_002156904.1 RRM 296 365

Links

Other RRM family RBPs
Other Hydra magnipapillata RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60936 Xenopus laevis AAA60936 I 0.715
AAEL010318 Aedes aegypti AAEL010318 I 0.730
AAH52100 Xenopus laevis AAH52100 I 0.718
AGAP011092 Anopheles gambiae AGAP011092 I 0.730
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.730
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.730
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.730
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.704
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.713
CAA40721 Xenopus laevis CAA40721 I 0.718
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.734
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.734
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.725
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.722
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.712
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.705
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.708
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.722
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.725
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.722
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.722
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.722
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.708
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.722
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.722
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.722
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.718
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.715
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.704
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.722
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.713
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.765
GH21052 Drosophila grimshawi FBgn0128514 I 0.706
GI18654 Drosophila mojavensis FBgn0141393 I 0.713
GJ21671 Drosophila virilis FBgn0208790 I 0.706
GK19652 Drosophila willistoni FBgn0221650 I 0.706
ISCW014211 Ixodes scapularis ISCW014211 I 0.722
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.704
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.722
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.709
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.709
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.709
P20965 Xenopus laevis P20965 I 0.718
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.715
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.725
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.725
PABPC1 Homo sapiens ENSG00000070756 D 0.722
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.722
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.725
pabpc1a Danio rerio ENSDARG00000017219 I 0.729
pabpc1b Danio rerio ENSDARG00000021140 I 0.709
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.732
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.725
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.700
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.725
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.701
PHUM617090 Pediculus humanus PHUM617090 I 0.716
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.701
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 1.000
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.701
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.718
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.725