CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GLRG_02833
(
Colletotrichum graminicola
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
GLRG_02833
T59918_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.818
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLRG_02833T0
S1
16
91
YPEIDEFVMVNVKQIAEMGAYVKLLEYDNIDGMILLSELSRRRIRSIQKLIRVGRNEVVVVLRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Colletotrichum graminicola
RBPs
256 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A6QQI7_BOVIN
Bos taurus
ENSBTAG00000019520
N
0.000
Ame_R001143
Ailuropoda melanoleuca
Ame_R001143
N
0.000
D3ZYL5_RAT
Rattus norvegicus
ENSRNOG00000028501
N
0.000
ENSCING00000012671
Ciona intestinalis
ENSCING00000012671
N
0.000
ENSPPYG00000007639
Pongo pygmaeus
ENSPPYG00000007639
N
0.000
estExt_fgenesh2_pg.C_sca_90284
Lottia gigantea
estExt_fgenesh2_pg.C_sca_90284
N
0.000
e_gw1.849.7.1
Daphnia pulex
e_gw1.849.7.1
N
0.000
LOC100414368
Callithrix jacchus
ENSCJAG00000012844
N
0.000
XP_001193057.1
Strongylocentrotus purpuratus
XP_001193057.1
N
0.000
XP_001200916.1
Strongylocentrotus purpuratus
XP_001200916.1
N
0.000
ZC3H18
Loxodonta africana
ENSLAFG00000015674
N
0.000
ZC3H18
Pteropus vampyrus
ENSPVAG00000017349
N
0.000
ZC3H18
Gasterosteus aculeatus
ENSGACG00000014025
N
0.000
ZC3H18
Tupaia belangeri
ENSTBEG00000008418
N
0.000
ZC3H18
Taeniopygia guttata
ENSTGUG00000007717
N
0.000
ZC3H18
Tetraodon nigroviridis
ENSTNIG00000004767
N
0.000
ZC3H18
Takifugu rubripes
ENSTRUG00000017347
N
0.000
ZC3H18
Tursiops truncatus
ENSTTRG00000006225
N
0.000
ZC3H18
Homo sapiens
ENSG00000158545
N
0.000
ZC3H18
Felis catus
ENSFCAG00000006654
N
0.000
Zc3h18
Dipodomys ordii
ENSDORG00000010090
N
0.000
ZC3H18
Canis familiaris
ENSCAFG00000019884
N
0.000
ZC3H18
Pan troglodytes
ENSPTRG00000008456
N
0.000
ZC3H18
Gallus gallus
ENSGALG00000006118
N
0.000
ZC3H18
Procavia capensis
ENSPCAG00000009939
N
0.000
ZC3H18
Macropus eugenii
ENSMEUG00000006599
N
0.000
ZC3H18
Meleagris gallopavo
ENSMGAG00000007631
N
0.000
ZC3H18
Microcebus murinus
ENSMICG00000006699
N
0.000
ZC3H18
Myotis lucifugus
ENSMLUG00000008818
N
0.000
ZC3H18
Macaca mulatta
ENSMMUG00000014323
N
0.000
ZC3H18
Monodelphis domestica
ENSMODG00000004251
N
0.000
Zc3h18
Mus musculus
ENSMUSG00000017478
N
0.000
ZC3H18
Gorilla gorilla
ENSGGOG00000012514
N
0.000
ZC3H18
Oryctolagus cuniculus
ENSOCUG00000001271
N
0.000
ZC3H18
Ochotona princeps
ENSOPRG00000006615
N
0.000
ZC3H18
Oryzias latipes
ENSORLG00000014056
N
0.000
ZC3H18
Ornithorhynchus anatinus
ENSOANG00000011368
N
0.000