CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TERG_00559
(
Trichophyton rubrum
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
TERG_00559
T60039_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.792
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TERG_00559T0
S1
14
88
PEIDSFVMVTVKQIAEMGAYVKLLEYDNIDGMILLSELSRRRIRSIQKLIRVGRNEVVVVLRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Trichophyton rubrum
RBPs
255 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL007436
Aedes aegypti
AAEL007436
N
0.000
AAEL801228
Aedes aegypti
AAEL007447
N
0.000
AGAP007802
Anopheles gambiae
AGAP007802
N
0.000
AGAP007808
Anopheles gambiae
AGAP007808
N
0.000
amel4_ncbi_hmm5263
Apis mellifera
amel4_ncbi_hmm5263
N
0.000
BGIBMGA005589
Bombyx mori
BGIBMGA005589
N
0.000
CPIJ010645
Culex quinquefasciatus
CPIJ010645
N
0.000
CPIJ011735
Culex quinquefasciatus
CPIJ011735
N
0.000
CpipJ_CPIJ010645
Culex pipiens
CpipJ_CPIJ010645
N
0.000
CpipJ_CPIJ011735
Culex pipiens
CpipJ_CPIJ011735
N
0.000
DGIL_AUG5s11561g1t1
Acyrtosiphon pisum
DGIL_AUG5s11561g1t1
N
0.000
GA16600-RA
Drosophila pseudoobscura
FBgn0076615
N
0.000
GD24374
Drosophila simulans
FBgn0195715
N
0.000
GE14506
Drosophila yakuba
FBgn0232110
N
0.000
GF19039
Drosophila ananassae
FBgn0096051
N
0.000
GH23931
Drosophila grimshawi
FBgn0131388
N
0.000
GJ14351
Drosophila virilis
FBgn0201564
N
0.000
GK13697
Drosophila willistoni
FBgn0215705
N
0.000
GL18179
Drosophila persimilis
FBgn0155782
N
0.000
GM26772
Drosophila sechellia
FBgn0181625
N
0.000
gw
Drosophila melanogaster
FBgn0051992
N
0.000
PASA_GEN_0100279
Daphnia pulex
PASA_GEN_0100279
N
0.000