estExt_fgenesh2_kg.C_10578 (Serpula lacrymans)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 estExt_fgenesh2_kg.C_10578 T06069_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_kg.C_10578 CCCH ZF 24 50
estExt_fgenesh2_kg.C_10578 CCCH ZF 62 88

Links

Other CCCH ZF family RBPs
Other Serpula lacrymans RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.000
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.000
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.000
PK28027.1 Cannabis sativa PK28027.1 I 0.000
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.000
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.000
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.000
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.000
MDP0000276227 Malus x domestica MDP0000276227 I 0.000
MDP0000123012 Malus x domestica MDP0000123012 N 0.000
MDP0000123414 Malus x domestica MDP0000123414 N 0.000
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.000
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.000
mgf023806m Mimulus guttatus mgf023806m I 0.000
mgf010468m Mimulus guttatus mgf010468m I 0.000
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.000
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.000
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.000
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.000
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.000
ppa005940m Prunus persica ppa005940m I 0.000
30169.m006434 Ricinus communis 30169.m006434 I 0.000
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.000
e_gw1.23.771.1 Selaginella moellendorfii e_gw1.23.771.1 I 0.000
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.000
SB01G045570 Sorghum bicolor Sb01g045570 I 0.000
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.000
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.000
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.000