gw1.163.50.1 (Physcomitrella patens)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 gw1.163.50.1 T14580_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.163.50.1 CCHC ZF 602 619

Links

Other CCHC ZF family RBPs
Other Physcomitrella patens RBPs

3 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.000
AAEL013795 Aedes aegypti AAEL013795 I 0.000
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.000
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.000
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.000
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.000
AGAP001538 Anopheles gambiae AGAP001538 I 0.000
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.000
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.000
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.000
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.000
59062 Aureococcus anophagefferens 59062 I 0.000
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.000
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.000
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.000
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.000
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.000
Bm1_43460 Brugia malayi Bm1_43460 I 0.000
CBN06124 Caenorhabditis brenneri CBN06124 I 0.000
CBG13349 Caenorhabditis briggsae CBG13349 I 0.000
sap-49 Caenorhabditis elegans C08B11.5 D 0.000
CJA19238 Caenorhabditis japonica CJA19238 I 0.000
CRE01639 Caenorhabditis remanei CRE01639 I 0.000
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.000
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.000
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.000
PK08238.1 Cannabis sativa PK08238.1 I 0.000
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.000
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.000
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.000
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.000
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.000
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.000
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.000
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.000
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.000
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.000
sf3b4 Danio rerio ENSDARG00000018574 D 0.000
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.000
GF20385 Drosophila ananassae FBgn0097392 I 0.000
GG19577 Drosophila erecta FBgn0111779 I 0.000
GH17589 Drosophila grimshawi FBgn0125059 I 0.000
Spx Drosophila melanogaster FBgn0015818 I 0.000
GI16317 Drosophila mojavensis FBgn0139065 I 0.000
GL21313 Drosophila persimilis FBgn0158906 I 0.000
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.000
GM12470 Drosophila sechellia FBgn0167407 I 0.000
GJ15655 Drosophila virilis FBgn0202845 I 0.000
GK19717 Drosophila willistoni FBgn0221715 I 0.000
GE16738 Drosophila yakuba FBgn0234234 I 0.000
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.000
LOC100054350 Equus caballus ENSECAG00000024737 I 0.000
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.000
SF3B4 Gallus gallus ENSGALG00000013352 I 0.000
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.000
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.000
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.000
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.000
99199 Helobdella robusta 99199 I 0.000
SF3B4 Homo sapiens ENSG00000143368 I 0.000
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.000
ISCW010601 Ixodes scapularis ISCW010601 I 0.000
LOAG_01189 Loa loa LOAG_01189 I 0.000
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.000
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.000
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.000
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.000
MDP0000320945 Malus x domestica MDP0000320945 I 0.000
MDP0000131129 Malus x domestica MDP0000131129 I 0.000
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.000
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.000
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.000
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.000
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.000
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.000
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.000
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.000
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.000
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.000
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.000
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.000
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.000
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.000
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.000
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.000
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.000
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.000
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.000
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.000
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.000
PHUM263440 Pediculus humanus PHUM263440 I 0.000
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.000
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.000
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.000
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.000
ppa007508m Prunus persica ppa007508m I 0.000
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.000
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.000
30183.m001303 Ricinus communis 30183.m001303 I 0.000
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.000
Smp_067420 Schistosoma mansoni Smp_067420 D 0.000
SB01G020190 Sorghum bicolor Sb01g020190 I 0.000
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.000
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.000
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.000
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.000
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.000
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.000
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.000
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.000
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.000
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.000
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.000
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.000
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.000
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.000
AAH45264 Xenopus laevis AAH45264 I 0.000
AAH77458 Xenopus laevis AAH77458 I 0.000
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.000
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.000