ENSGGOG00000004758 (Gorilla gorilla)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSGGOG00000004758 T16872_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.789
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.789
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.764
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.764
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.764
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGGOP00000004660 CSD 37 102
ENSGGOP00000021057 CSD 124 176

Links

Other CSD family RBPs
Other Gorilla gorilla RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.000
AAEL001375 Aedes aegypti AAEL001375 I 0.000
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.000
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.000
AGAP006108 Anopheles gambiae AGAP006108 I 0.000
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.000
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.000
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.000
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.778
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.750
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.750
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.778
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.736
Bm1_57515 Brugia malayi Bm1_57515 I 0.000
CBN16711 Caenorhabditis brenneri CBN16711 I 0.000
CBG02981 Caenorhabditis briggsae CBG02981 I 0.000
cey-1 Caenorhabditis elegans F33A8.3 I 0.000
CRE01789 Caenorhabditis remanei CRE01789 I 0.000
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.764
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.750
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.718
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.778
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.000
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.764
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.732
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.722
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.718
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.778
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.000
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.778
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.736
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.000
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.000
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.778
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.778
YBX2 Canis familiaris ENSCAFG00000016128 I 0.750
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.000
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.000
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.718
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.000
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.000
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.000
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.000
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.000
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.000
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.000
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.750
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.778
CSDA Cavia porcellus ENSCPOG00000011329 I 0.778
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.778
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.000
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.000
ybx1 Danio rerio ENSDARG00000004757 I 0.778
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.000
Csda Dipodomys ordii ENSDORG00000009103 I 0.778
GF10852 Drosophila ananassae FBgn0087892 I 0.000
GH16919 Drosophila grimshawi FBgn0124390 I 0.000
yps Drosophila melanogaster FBgn0022959 I 0.000
GI13673 Drosophila mojavensis FBgn0136428 I 0.000
GL15684 Drosophila persimilis FBgn0153288 I 0.000
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.000
GM24682 Drosophila sechellia FBgn0179545 I 0.000
GD12750 Drosophila simulans FBgn0184477 I 0.000
GJ14010 Drosophila virilis FBgn0201228 I 0.000
GK16710 Drosophila willistoni FBgn0218712 I 0.000
CSDA Echinops telfairi ENSETEG00000002557 I 0.778
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.778
LOC100067336 Equus caballus ENSECAG00000023592 I 0.778
LOC100065107 Equus caballus ENSECAG00000013777 I 0.778
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.764
LOC100072964 Equus caballus ENSECAG00000009996 I 0.750
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.750
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.778
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.778
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.821
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.778
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.778
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.000
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.755
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.750
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.944
146547 Helobdella robusta 146547 I 0.000
133388 Helobdella robusta 133388 I 0.000
YBX2 Homo sapiens ENSG00000006047 D 0.736
CSDA Homo sapiens ENSG00000060138 I 0.778
YB-1 Homo sapiens ENSG00000065978 D 1.000
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.000
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.000
ISCW005281 Ixodes scapularis ISCW005281 I 0.000
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.746
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.783
CSDA Loxodonta africana ENSLAFG00000017247 I 0.778
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.891
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.764
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.750
CSDA Macaca mulatta ENSMMUG00000022469 I 0.778
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.778
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.778
Minc12652 Meloidogyne incognita Minc12652 I 0.000
YBX1 Microcebus murinus ENSMICG00000014984 I 0.778
CSDA Monodelphis domestica ENSMODG00000018248 I 0.764
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.778
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.736
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.736
Csda Mus musculus ENSMUSG00000030189 I 0.778
Ybx2 Mus musculus ENSMUSG00000018554 I 0.750
Ybx1 Mus musculus ENSMUSG00000028639 I 0.778
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.750
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.718
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.000
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.778
nasonia_NCBI_hmm1188384 Nasonia vitripennis nasonia_NCBI_hmm1188384 I 0.000
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.000
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.750
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.778
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.778
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.778
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.000
CSDA Pan troglodytes ENSPTRG00000004681 I 0.778
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.778
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.736
PHUM156720 Pediculus humanus PHUM156720 I 0.000
PHUM156710 Pediculus humanus PHUM156710 I 0.000
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.778
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.000
CSDA Procavia capensis ENSPCAG00000001397 I 0.708
YBX2 Procavia capensis ENSPCAG00000008019 I 0.750
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.778
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.778
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.736
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.778
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.732
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.764
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.750
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.750
Csda Rattus norvegicus ENSRNOG00000005480 I 0.778
YBX2 Sorex araneus ENSSARG00000000488 I 0.736
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.778
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.000
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.000
CSDA Sus scrofa ENSSSCG00000000633 I 0.778
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.722
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.718
YBX2 Sus scrofa ENSSSCG00000017938 I 0.750
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.778
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.778
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.000
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.778
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.000
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.778
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.000
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.000
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.750
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.778
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.785
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.778
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.000
AAI55915 Xenopus laevis AAI55915 I 0.764
AAI69704 Xenopus laevis AAI69704 I 0.764
ybx2-a Xenopus laevis AAI69706 D 0.764
CAA42778 Xenopus laevis CAA42778 I 0.778
P21573 Xenopus laevis P21573 I 0.778
P21574 Xenopus laevis P21574 I 0.764
P45441 Xenopus laevis P45441 I 0.750
AAI55914 Xenopus laevis AAI55914 I 0.750
AAI30161 Xenopus laevis AAI30161 I 0.778
AAI06324 Xenopus laevis AAI06324 I 0.778
AAH42217 Xenopus laevis AAH42217 I 0.778
AAH41191 Xenopus laevis AAH41191 I 0.778
AAA49924 Xenopus laevis AAA49924 I 0.750
AAA49716 Xenopus laevis AAA49716 I 0.764
AAA49715 Xenopus laevis AAA49715 I 0.778
Q00436 Xenopus laevis Q00436 I 0.778
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.778
csda Xenopus tropicalis ENSXETG00000016239 I 0.750