ENSSSCG00000015308 (Sus scrofa)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSSSCG00000015308 T17021_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.887
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.887
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.833
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.833
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.833
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000016235 CSD 42 112

Links

Other CSD family RBPs
Other Sus scrofa RBPs

176 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.732
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.746
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.746
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.732
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.861
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.847
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.833
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.861
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.792
CBN16711 Caenorhabditis brenneri CBN16711 I 0.704
cey-1 Caenorhabditis elegans F33A8.3 I 0.704
CRE01789 Caenorhabditis remanei CRE01789 I 0.704
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.833
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.833
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.718
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.831
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.861
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.817
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.722
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.803
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.792
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.775
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.861
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.732
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.833
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.861
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.808
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.775
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.847
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.861
YBX2 Canis familiaris ENSCAFG00000016128 I 0.833
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.704
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.704
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.806
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.718
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.718
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.704
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.789
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.833
CSDA Cavia porcellus ENSCPOG00000011329 I 0.861
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.861
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.861
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.708
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.722
ybx1 Danio rerio ENSDARG00000004757 I 0.861
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.732
Csda Dipodomys ordii ENSDORG00000009103 I 0.861
GF10852 Drosophila ananassae FBgn0087892 I 0.732
GH16919 Drosophila grimshawi FBgn0124390 I 0.732
yps Drosophila melanogaster FBgn0022959 I 0.718
GI13673 Drosophila mojavensis FBgn0136428 I 0.732
GL15684 Drosophila persimilis FBgn0153288 I 0.732
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.732
GM24682 Drosophila sechellia FBgn0179545 I 0.718
GD12750 Drosophila simulans FBgn0184477 I 0.718
GJ14010 Drosophila virilis FBgn0201228 I 0.732
GK16710 Drosophila willistoni FBgn0218712 I 0.732
GE20150 Drosophila yakuba FBgn0237472 I 0.718
CSDA Echinops telfairi ENSETEG00000002557 I 0.861
LOC100065107 Equus caballus ENSECAG00000013777 I 0.861
LOC100067336 Equus caballus ENSECAG00000023592 I 0.861
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.875
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.861
LOC100072964 Equus caballus ENSECAG00000009996 I 0.833
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.806
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.861
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.861
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.861
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.861
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.764
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.861
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.861
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.847
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.819
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.718
CSDA Homo sapiens ENSG00000060138 I 0.861
YB-1 Homo sapiens ENSG00000065978 D 0.861
YBX2 Homo sapiens ENSG00000006047 D 0.819
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.761
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.761
ISCW005281 Ixodes scapularis ISCW005281 I 0.732
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.789
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.833
CSDA Loxodonta africana ENSLAFG00000017247 I 0.861
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.861
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.847
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.833
CSDA Macaca mulatta ENSMMUG00000022469 I 0.861
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.861
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.718
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.861
YBX1 Microcebus murinus ENSMICG00000014984 I 0.861
CSDA Microcebus murinus ENSMICG00000004602 I 0.722
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.806
CSDA Monodelphis domestica ENSMODG00000018248 I 0.847
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.861
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.819
Csda Mus musculus ENSMUSG00000030189 I 0.861
Ybx1 Mus musculus ENSMUSG00000028639 I 0.861
Ybx2 Mus musculus ENSMUSG00000018554 I 0.833
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.789
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.861
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.817
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.833
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.704
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.746
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.833
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.704
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.861
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.861
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.764
YBX2 Oryzias latipes ENSORLG00000018683 I 0.704
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.861
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.746
CSDA Pan troglodytes ENSPTRG00000004681 I 0.861
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.861
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.819
PHUM156710 Pediculus humanus PHUM156710 I 0.732
PHUM156720 Pediculus humanus PHUM156720 I 0.718
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.722
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.861
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.732
CSDA Procavia capensis ENSPCAG00000001397 I 0.806
YBX2 Procavia capensis ENSPCAG00000008019 I 0.833
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.861
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.861
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.819
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.704
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.789
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.704
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.861
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.833
Csda Rattus norvegicus ENSRNOG00000005480 I 0.861
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.833
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.847
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.718
YBX2 Sorex araneus ENSSARG00000000488 I 0.819
YBX1 Sorex araneus ENSSARG00000012628 I 0.732
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.861
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.746
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.746
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.806
CSDA Sus scrofa ENSSSCG00000000633 I 0.861
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.761
YBX2 Sus scrofa ENSSSCG00000017938 I 0.833
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.861
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.861
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.764
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.861
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.746
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.861
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.764
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.746
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.833
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.861
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.761
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.861
CSDA Vicugna pacos ENSVPAG00000000876 I 0.722
AAI55915 Xenopus laevis AAI55915 I 0.819
AAI69704 Xenopus laevis AAI69704 I 0.819
ybx2-a Xenopus laevis AAI69706 D 0.819
CAA42778 Xenopus laevis CAA42778 I 0.861
P21573 Xenopus laevis P21573 I 0.861
P45441 Xenopus laevis P45441 I 0.806
P21574 Xenopus laevis P21574 I 0.819
AAI55914 Xenopus laevis AAI55914 I 0.806
AAI30161 Xenopus laevis AAI30161 I 0.861
AAI06324 Xenopus laevis AAI06324 I 0.861
AAH42217 Xenopus laevis AAH42217 I 0.861
AAH41191 Xenopus laevis AAH41191 I 0.861
AAA49924 Xenopus laevis AAA49924 I 0.806
AAA49716 Xenopus laevis AAA49716 I 0.819
AAA49715 Xenopus laevis AAA49715 I 0.861
Q00436 Xenopus laevis Q00436 I 0.861
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.861
csda Xenopus tropicalis ENSXETG00000016239 I 0.819