ISCW005281 (Ixodes scapularis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ISCW005281 T17120_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.831
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.831
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.806
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.792
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.792
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW005281-PA CSD 16 86

Links

Other CSD family RBPs
Other Ixodes scapularis RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.817
AAEL001375 Aedes aegypti AAEL001375 I 0.775
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.803
AGAP006108 Anopheles gambiae AGAP006108 I 0.775
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.789
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.789
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.789
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.819
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.806
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.806
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.778
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.764
Bm1_57515 Brugia malayi Bm1_57515 I 0.761
CBN16711 Caenorhabditis brenneri CBN16711 I 0.732
CBG02981 Caenorhabditis briggsae CBG02981 I 0.718
cey-1 Caenorhabditis elegans F33A8.3 I 0.732
CJA05984 Caenorhabditis japonica CJA05984 I 0.746
CRE01789 Caenorhabditis remanei CRE01789 I 0.732
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.806
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.746
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.792
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.833
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.746
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.806
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.732
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.750
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.746
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.704
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.736
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.817
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.750
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.806
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.726
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.718
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.792
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.806
YBX2 Canis familiaris ENSCAFG00000016128 I 0.819
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.817
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.718
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.718
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.704
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.704
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.704
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.704
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.803
CSDA Cavia porcellus ENSCPOG00000011329 I 0.806
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.806
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.819
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.806
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.708
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.722
ybx1 Danio rerio ENSDARG00000004757 I 0.806
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.831
Csda Dipodomys ordii ENSDORG00000009103 I 0.806
GF10852 Drosophila ananassae FBgn0087892 I 0.803
GH16919 Drosophila grimshawi FBgn0124390 I 0.803
yps Drosophila melanogaster FBgn0022959 I 0.817
GI13673 Drosophila mojavensis FBgn0136428 I 0.803
GL15684 Drosophila persimilis FBgn0153288 I 0.803
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.803
GM24682 Drosophila sechellia FBgn0179545 I 0.817
GD12750 Drosophila simulans FBgn0184477 I 0.817
GJ14010 Drosophila virilis FBgn0201228 I 0.803
GK16710 Drosophila willistoni FBgn0218712 I 0.803
GE20150 Drosophila yakuba FBgn0237472 I 0.817
CSDA Echinops telfairi ENSETEG00000002557 I 0.806
LOC100067336 Equus caballus ENSECAG00000023592 I 0.806
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.806
LOC100072964 Equus caballus ENSECAG00000009996 I 0.819
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.792
LOC100065107 Equus caballus ENSECAG00000013777 I 0.806
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.750
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.806
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.806
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.806
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.806
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.750
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.806
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.806
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.806
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.792
133388 Helobdella robusta 133388 I 0.732
146547 Helobdella robusta 146547 I 0.761
YB-1 Homo sapiens ENSG00000065978 D 0.806
CSDA Homo sapiens ENSG00000060138 I 0.806
YBX2 Homo sapiens ENSG00000006047 D 0.806
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.761
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.761
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.775
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.806
CSDA Loxodonta africana ENSLAFG00000017247 I 0.806
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.819
CSDA Macaca mulatta ENSMMUG00000022469 I 0.806
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.833
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.792
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.806
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.704
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.806
Minc12652 Meloidogyne incognita Minc12652 I 0.704
YBX1 Microcebus murinus ENSMICG00000014984 I 0.806
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.764
CSDA Monodelphis domestica ENSMODG00000018248 I 0.792
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.806
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.806
Ybx1 Mus musculus ENSMUSG00000028639 I 0.806
Ybx2 Mus musculus ENSMUSG00000018554 I 0.819
Csda Mus musculus ENSMUSG00000030189 I 0.806
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.806
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.817
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.778
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.732
nasonia_NCBI_hmm1188384 Nasonia vitripennis nasonia_NCBI_hmm1188384 I 0.704
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.761
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.819
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.704
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.732
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.806
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.806
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.750
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.806
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.704
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.806
CSDA Pan troglodytes ENSPTRG00000004681 I 0.806
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.806
PHUM156720 Pediculus humanus PHUM156720 I 0.789
PHUM156710 Pediculus humanus PHUM156710 I 0.803
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.806
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.775
YBX2 Procavia capensis ENSPCAG00000008019 I 0.819
CSDA Procavia capensis ENSPCAG00000001397 I 0.750
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.806
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.806
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.792
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.775
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.778
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.806
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.792
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.819
Csda Rattus norvegicus ENSRNOG00000005480 I 0.806
YBX2 Sorex araneus ENSSARG00000000488 I 0.806
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.806
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.775
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.775
YBX2 Sus scrofa ENSSSCG00000017938 I 0.819
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.732
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.718
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.750
CSDA Sus scrofa ENSSSCG00000000633 I 0.806
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.806
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.806
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.806
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.764
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.764
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.806
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.789
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.718
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.806
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.819
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.732
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.806
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.761
P45441 Xenopus laevis P45441 I 0.778
P21574 Xenopus laevis P21574 I 0.792
P21573 Xenopus laevis P21573 I 0.806
CAA42778 Xenopus laevis CAA42778 I 0.806
ybx2-a Xenopus laevis AAI69706 D 0.792
AAI69704 Xenopus laevis AAI69704 I 0.792
AAI55915 Xenopus laevis AAI55915 I 0.792
AAI55914 Xenopus laevis AAI55914 I 0.778
AAI30161 Xenopus laevis AAI30161 I 0.806
AAI06324 Xenopus laevis AAI06324 I 0.806
AAH42217 Xenopus laevis AAH42217 I 0.806
AAH41191 Xenopus laevis AAH41191 I 0.806
AAA49924 Xenopus laevis AAA49924 I 0.778
AAA49716 Xenopus laevis AAA49716 I 0.792
AAA49715 Xenopus laevis AAA49715 I 0.806
Q00436 Xenopus laevis Q00436 I 0.806
csda Xenopus tropicalis ENSXETG00000016239 I 0.778
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.806