PSPC1_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000017142 T37735_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.759
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.759
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.705
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000027634 RRM 83 147
ENSGALP00000027634 RRM 157 222
ENSGALP00000035658 RRM 83 147
ENSGALP00000035658 RRM 157 222

Links

Other RRM family RBPs
Other Gallus gallus RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.977
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.705
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.759
PSPC1 Anolis carolinensis ENSACAG00000002093 I 1.000
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.735
SFPQ Bos taurus ENSBTAG00000016328 I 0.759
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.705
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.969
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.705
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.759
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.977
PSPC1 Canis familiaris ENSCAFG00000007365 N 0.878
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.737
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.759
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.705
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.705
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.759
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.705
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.977
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.977
nono Danio rerio ENSDARG00000020482 I 0.718
sfpq Danio rerio ENSDARG00000011564 I 0.725
pspc1 Danio rerio ENSDARG00000006621 N 0.786
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.916
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.744
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.969
SFPQ Echinops telfairi ENSETEG00000001095 I 0.759
LOC100069588 Equus caballus ENSECAG00000000642 I 0.759
NONO Equus caballus ENSECAG00000008502 I 0.705
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.705
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.962
PSPC1 Felis catus ENSFCAG00000013701 I 0.947
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.718
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.773
PSPC1 Gasterosteus aculeatus ENSGACG00000014901 N 0.718
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.767
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.759
NONO Gorilla gorilla ENSGGOG00000006194 I 0.705
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.977
NONO Homo sapiens ENSG00000147140 D 0.705
PSPC1 Homo sapiens ENSG00000121390 I 0.977
SFPQ Homo sapiens ENSG00000116560 D 0.759
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.977
NONO Loxodonta africana ENSLAFG00000013422 I 0.705
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.759
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.705
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.977
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.767
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.977
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.718
SFPQ Microcebus murinus ENSMICG00000011755 I 0.759
NONO Microcebus murinus ENSMICG00000000232 I 0.705
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.767
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.977
NONO Monodelphis domestica ENSMODG00000004445 I 0.705
Sfpq Mus musculus ENSMUSG00000028820 I 0.759
Nono Mus musculus ENSMUSG00000031311 I 0.705
Pspc1 Mus musculus ENSMUSG00000021938 I 0.977
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.977
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.759
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.759
ENSOANG00000011381 Ornithorhynchus anatinus ENSOANG00000011381 N 0.733
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.759
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.705
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.977
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.756
PSPC1 Oryzias latipes ENSORLG00000004232 N 0.748
NONO Otolemur garnettii ENSOGAG00000004834 I 0.705
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.705
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.977
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.759
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.705
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.977
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.759
SFPQ Procavia capensis ENSPCAG00000006164 I 0.759
NONO Procavia capensis ENSPCAG00000002541 I 0.705
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.705
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.714
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.969
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.759
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.977
Nono Rattus norvegicus ENSRNOG00000003689 I 0.705
PSPC1 Sorex araneus ENSSARG00000000888 I 0.977
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.759
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.969
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 1.000
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.718
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.773
PSPC1 Takifugu rubripes ENSTRUG00000011335 N 0.718
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.802
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.727
PSPC1 Tetraodon nigroviridis ENSTNIG00000010358 N 0.718
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.786
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.742
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.759
NONO Tursiops truncatus ENSTTRG00000009605 I 0.705
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.969
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.759
NONO Vicugna pacos ENSVPAG00000002272 I 0.705
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.771