ELAVL3 (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000010506 T40703_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.896
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.896
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.896
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.887
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.887
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.887
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.735
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.735
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.735
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.735
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.735
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000017919 RRM 41 110
ENSPTRP00000017919 RRM 126 194
ENSPTRP00000017919 RRM 248 318

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

172 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.972
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.878
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.887
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.731
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.929
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.883
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.887
AGAP000965 Anopheles gambiae AGAP000965 I 0.717
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.736
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.726
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.972
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.887
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.742
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.887
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.878
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.878
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.972
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.731
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.887
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.887
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.878
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.708
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.745
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.887
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.717
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.717
elavl4 Danio rerio ENSDARG00000045639 I 0.884
elavl1 Danio rerio ENSDARG00000038695 I 0.739
hug Danio rerio ENSDARG00000016405 I 0.744
elavl3 Danio rerio ENSDARG00000014420 I 0.938
elavl2 Danio rerio ENSDARG00000040732 I 0.859
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.887
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.722
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.722
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.878
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.948
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.722
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.887
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.878
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.750
LOC100056901 Equus caballus ENSECAG00000020594 I 0.886
LOC100051268 Equus caballus ENSECAG00000022284 I 0.887
LOC100060819 Equus caballus ENSECAG00000019459 I 0.726
ELAVL2 Equus caballus ENSECAG00000020142 I 0.878
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.722
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.887
ELAVL1 Felis catus ENSFCAG00000014947 I 0.731
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.869
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.887
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.726
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.864
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.938
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.701
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.887
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.729
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.972
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.731
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.878
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.887
ELAVL2 Homo sapiens ENSG00000107105 D 0.878
ELAVL4 Homo sapiens ENSG00000162374 D 0.887
ELAVL3 Homo sapiens ENSG00000196361 I 0.972
ELAVL1 Homo sapiens ENSG00000066044 D 0.731
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.708
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.878
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.731
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.887
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.972
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.887
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.878
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.731
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.934
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.887
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.771
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.887
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.726
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.731
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.887
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.711
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.905
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.731
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.883
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.701
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.887
Elavl4 Mus musculus ENSMUSG00000028546 I 0.887
Elavl2 Mus musculus ENSMUSG00000008489 I 0.878
Elavl1 Mus musculus ENSMUSG00000040028 I 0.722
Elavl3 Mus musculus ENSMUSG00000003410 I 0.962
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.873
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.736
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.887
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.726
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.887
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.878
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.731
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.810
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.878
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.731
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.887
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.887
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.873
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.930
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.731
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.887
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.741
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.972
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.731
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.878
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.731
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.887
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.878
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.887
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.731
ENSPPYG00000009583 Pongo pygmaeus ENSPPYG00000009583 N 0.711
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.887
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.848
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.829
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.972
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.878
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.962
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.878
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.722
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.887
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.887
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.878
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.833
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.776
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.717
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.878
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.972
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.726
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.887
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.859
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.726
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.938
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.883
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.730
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.711
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.868
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.731
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.887
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.867
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.717
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.925
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.864
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.883
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.829
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.750
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.719
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.972
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.873
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.878
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.887
AAH94189 Xenopus laevis AAH94189 I 0.883
AAH99348 Xenopus laevis AAH99348 I 0.892
AAA96945 Xenopus laevis AAA96945 I 0.892
AAI69769 Xenopus laevis AAI69769 I 0.929
AAI70539 Xenopus laevis AAI70539 I 0.883
CAA59430 Xenopus laevis CAA59430 I 0.878
AAH86269 Xenopus laevis AAH86269 I 0.722
CBU92440 Xenopus laevis CBU92440 I 0.892
AAA96944 Xenopus laevis AAA96944 I 0.929
AAA96943 Xenopus laevis AAA96943 I 0.883
AAA96942 Xenopus laevis AAA96942 I 0.726
Q5U259 Xenopus laevis Q5U259 I 0.722
Q91584 Xenopus laevis Q91584 I 0.929
Q91903 Xenopus laevis Q91903 I 0.883
CBF67567 Xenopus laevis CBF67567 I 0.892
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.736
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.892
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.726
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.925