estExt_Genewise1Plus.C_330054 (Phycomyces blakesleeanus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_330054 T51451_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.715
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_330054 RRM 14 84
estExt_Genewise1Plus.C_330054 RRM 101 172

Links

Other RRM family RBPs
Other Phycomyces blakesleeanus RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.734
AAEL013795 Aedes aegypti AAEL013795 I 0.734
estExt_fgenesh2_pm.C_20717 Agaricus bisporus estExt_fgenesh2_pm.C_20717 N 0.727
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.727
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.727
AGAP001538 Anopheles gambiae AGAP001538 I 0.720
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.713
e_gw1.00735.103.1 Aspergillus carbonarius e_gw1.00735.103.1 N 0.722
ACLA_095350 Aspergillus clavatus CADACLAG00009128 N 0.729
AFLA_054780 Aspergillus flavus CADAFLAG00006087 N 0.715
AFUA_6G05180 Aspergillus fumigatus CADAFUAG00000741 N 0.729
ANIA_06501 Aspergillus nidulans CADANIAG00007269 N 0.736
An15g00100 Aspergillus niger CADANGAG00011688 N 0.729
ATEG_05656 Aspergillus terreus CADATEAG00000804 N 0.705
BDBG_09421 Blastomyces dermatitidis BDBG_09421 N 0.706
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.727
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.713
BC1G_13457 Botrytis cinerea BC1G_13457 N 0.706
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.720
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.734
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.734
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.727
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.727
PK08238.1 Cannabis sativa PK08238.1 I 0.720
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.706
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.727
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.713
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.727
CIMG_02600 Coccidioides immitis CIMG_02600 N 0.706
CPSG_00446 Coccidioides posadasii CPSG_00446 N 0.706
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.727
CC1G_10837 Coprinopsis cinerea CC1G_10837 N 0.734
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.720
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.734
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.734
sf3b4 Danio rerio ENSDARG00000018574 D 0.727
GF20385 Drosophila ananassae FBgn0097392 I 0.713
GG19577 Drosophila erecta FBgn0111779 I 0.713
GH17589 Drosophila grimshawi FBgn0125059 I 0.720
Spx Drosophila melanogaster FBgn0015818 I 0.706
GI16317 Drosophila mojavensis FBgn0139065 I 0.720
GL21313 Drosophila persimilis FBgn0158906 I 0.720
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.720
GM12470 Drosophila sechellia FBgn0167407 I 0.706
GJ15655 Drosophila virilis FBgn0202845 I 0.720
GK19717 Drosophila willistoni FBgn0221715 I 0.713
GE16738 Drosophila yakuba FBgn0234234 I 0.713
LOC100054350 Equus caballus ENSECAG00000024737 I 0.727
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.727
SF3B4 Gallus gallus ENSGALG00000013352 I 0.727
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.727
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.713
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.713
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.727
e_gw1.2.1555.1 Heterobasidion annosum e_gw1.2.1555.1 N 0.741
HCAG_06893 Histoplasma capsulatum HCAG_06893 N 0.713
SF3B4 Homo sapiens ENSG00000143368 I 0.727
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.727
ISCW010601 Ixodes scapularis ISCW010601 I 0.720
estExt_GeneWisePlus_worm.C_60233 Laccaria bicolor estExt_GeneWisePlus_worm.C_60233 N 0.727
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.734
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.727
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.727
MDP0000320945 Malus x domestica MDP0000320945 I 0.713
MDP0000131129 Malus x domestica MDP0000131129 I 0.713
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.706
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.713
estExt_fgenesh1_kg.C_70028 Melampsora laricis populina estExt_fgenesh1_kg.C_70028 N 0.734
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.727
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.727
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.727
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.867
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.727
estExt_Genewise1Plus.C_150062 Mycosphaerella fijiensis estExt_Genewise1Plus.C_150062 N 0.706
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.727
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.720
NFIA_051760 Neosartorya fischeri CADNFIAG00005042 N 0.729
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.727
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.727
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.734
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.734
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.727
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.706
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.727
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.727
Pc12g04780 Penicillium chrysogenum Pc12g04780 N 0.715
PMAA_011470 Penicillium marneffei PMAA_011470 N 0.706
e_gwh2.1.820.1 Phanerochaete chrysosporium e_gwh2.1.820.1 N 0.748
genemark.276_g Pleurotus ostreatus genemark.276_g N 0.741
PredSwiss_ASS2010_2420.1 Pneumocystis carinii PredSwiss_ASS2010_2420.1 N 0.706
PredSwiss_CON266.4 Pneumocystis carinii PredSwiss_CON266.4 N 0.706
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.720
estExt_Genewise1Plus.C_920074 Postia placenta estExt_Genewise1Plus.C_920074 I 0.762
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.720
ppa007508m Prunus persica ppa007508m I 0.713
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.727
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.727
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.811
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.811
30183.m001303 Ricinus communis 30183.m001303 I 0.720
e_gw1.2.2306.1 Schizophyllum commune e_gw1.2.2306.1 I 0.741
SS1G_09077 Sclerotinia sclerotiorum SS1G_09077 N 0.706
fgenesh2_kg.11_#_983_#_7076_1_CFOT Serpula lacrymans fgenesh2_kg.11_#_983_#_7076_1_CFOT N 0.741
SB01G020190 Sorghum bicolor Sb01g020190 I 0.734
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.710
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.797
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.713
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.713
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.727
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.727
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.727
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.727
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.727
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.706
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.727
UREG_03156 Uncinocarpus reesii UREG_03156 N 0.706
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.727
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.713
AAH45264 Xenopus laevis AAH45264 I 0.720
AAH77458 Xenopus laevis AAH77458 I 0.720
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.727
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.720
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.727