MDP0000577111 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000577111 T06381_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000577111 CCCH ZF 51 77
MDP0000577111 CCCH ZF 106 126
MDP0000577111 CCCH ZF 148 173
MDP0000577111 CCCH ZF 308 334
MDP0000577111 CCCH ZF 354 365

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000665604 Malus x domestica MDP0000665604 N 1.000
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.814
ppa005813m Prunus persica ppa005813m N 0.813
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.806
30128.m009030 Ricinus communis 30128.m009030 N 0.806
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.791
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.791
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.791
MDP0000178517 Malus x domestica MDP0000178517 N 0.791
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.784
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.784
PK23881.1 Cannabis sativa PK23881.1 N 0.776
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.769
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.769
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.754
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.754
SB05G013190 Sorghum bicolor Sb05g013190 N 0.752
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.746
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.746
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.746
mgf007299m Mimulus guttatus mgf007299m N 0.739
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.739
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.729
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.724
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.724
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.716
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.709