chr1.CM1413.200.nd (Lotus japonicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 chr1.CM1413.200.nd T05993_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM1413.200.nd CCCH ZF 21 47
chr1.CM1413.200.nd CCCH ZF 67 92
chr1.CM1413.200.nd CCCH ZF 112 138
chr1.CM1413.200.nd CCCH ZF 269 295
chr1.CM1413.200.nd CCCH ZF 315 341

Links

Other CCCH ZF family RBPs
Other Lotus japonicus RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.978
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.963
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.955
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.955
30128.m009030 Ricinus communis 30128.m009030 N 0.955
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.948
ppa005813m Prunus persica ppa005813m N 0.940
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.933
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.919
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.919
PK23881.1 Cannabis sativa PK23881.1 N 0.918
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.881
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.881
mgf007299m Mimulus guttatus mgf007299m N 0.874
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.873
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.873
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.873
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.858
SB05G013190 Sorghum bicolor Sb05g013190 N 0.858
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.858
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.851
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.851
MDP0000178517 Malus x domestica MDP0000178517 N 0.843
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.836
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.836
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.836
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.836
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.828
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.822
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.821
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.806
MDP0000665604 Malus x domestica MDP0000665604 N 0.784
MDP0000577111 Malus x domestica MDP0000577111 N 0.784
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.769
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.733
ppa005056m Prunus persica ppa005056m N 0.724
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.724
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.724
29726.m004014 Ricinus communis 29726.m004014 N 0.724
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.719
MDP0000535412 Malus x domestica MDP0000535412 N 0.716
MDP0000319251 Malus x domestica MDP0000319251 N 0.709
mgf002685m Mimulus guttatus mgf002685m N 0.709
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.709
ppa005229m Prunus persica ppa005229m N 0.709
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.704
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.704
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.701
29647.m002009 Ricinus communis 29647.m002009 N 0.701