BRADI4G19010 (Brachypodium distachyon)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BRADI4G19010 T02010_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G19010.1 CCCH ZF 58 83
BRADI4G19010.1 CCCH ZF 103 128
BRADI4G19010.1 CCCH ZF 148 174
BRADI4G19010.1 CCCH ZF 310 336
BRADI4G19010.1 CCCH ZF 356 382

Links

Other CCCH ZF family RBPs
Other Brachypodium distachyon RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.970
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.947
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.940
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.925
SB05G013190 Sorghum bicolor Sb05g013190 N 0.925
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.910
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.902
ppa005813m Prunus persica ppa005813m N 0.873
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.873
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.873
30128.m009030 Ricinus communis 30128.m009030 N 0.866
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.866
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.858
PK23881.1 Cannabis sativa PK23881.1 N 0.858
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.858
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.851
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.850
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.842
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.837
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.837
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.828
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.828
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.822
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.821
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.821
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.821
mgf007299m Mimulus guttatus mgf007299m N 0.815
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.813
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.813
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.784
MDP0000178517 Malus x domestica MDP0000178517 N 0.782
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.769
MDP0000665604 Malus x domestica MDP0000665604 N 0.724
MDP0000577111 Malus x domestica MDP0000577111 N 0.724
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.719
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.716
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.701
29726.m004014 Ricinus communis 29726.m004014 N 0.701