cassava12889.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava12889.valid.m1 T04744_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12889.valid.m1 CCCH ZF 52 78
cassava12889.valid.m1 CCCH ZF 97 123
cassava12889.valid.m1 CCCH ZF 145 169
cassava12889.valid.m1 CCCH ZF 303 329
cassava12889.valid.m1 CCCH ZF 349 375

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 1.000
30128.m009030 Ricinus communis 30128.m009030 N 0.963
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.963
ppa005813m Prunus persica ppa005813m N 0.941
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.919
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.911
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.911
PK23881.1 Cannabis sativa PK23881.1 N 0.904
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.904
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.889
mgf007299m Mimulus guttatus mgf007299m N 0.887
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.874
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.867
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.867
SB05G013190 Sorghum bicolor Sb05g013190 N 0.866
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.859
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.859
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.859
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.852
MDP0000178517 Malus x domestica MDP0000178517 N 0.844
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.844
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.843
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.837
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.837
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.822
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.822
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.806
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.800
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.800
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.793
MDP0000665604 Malus x domestica MDP0000665604 N 0.791
MDP0000577111 Malus x domestica MDP0000577111 N 0.791
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.785
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.756
ppa005056m Prunus persica ppa005056m N 0.719
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.711
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.711
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.711
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.709
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.709
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.704
29726.m004014 Ricinus communis 29726.m004014 N 0.704