Medtr7g089530 (Medicago truncatula)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Medtr7g089530 T05791_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr7g089530.1 CCCH ZF 31 57
Medtr7g089530.1 CCCH ZF 92 112
Medtr7g089530.1 CCCH ZF 132 158
Medtr7g089530.1 CCCH ZF 289 315
Medtr7g089530.1 CCCH ZF 335 361

Links

Other CCCH ZF family RBPs
Other Medicago truncatula RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.940
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.933
30128.m009030 Ricinus communis 30128.m009030 N 0.910
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.910
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.910
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.910
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.903
ppa005813m Prunus persica ppa005813m N 0.896
PK23881.1 Cannabis sativa PK23881.1 N 0.881
MDP0000178517 Malus x domestica MDP0000178517 N 0.876
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.874
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.874
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.851
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.851
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.843
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.836
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.836
mgf007299m Mimulus guttatus mgf007299m N 0.830
SB05G013190 Sorghum bicolor Sb05g013190 N 0.828
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.828
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.821
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.821
MDP0000577111 Malus x domestica MDP0000577111 N 0.814
MDP0000665604 Malus x domestica MDP0000665604 N 0.814
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.813
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.806
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.806
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.806
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.806
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.799
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.793
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.791
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.761
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.739